View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_high_2 (Length: 340)
Name: NF10525_high_2
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 7107408 - 7107630
Alignment:
| Q |
18 |
attcatgttggtggtaatttatttaataaactgatgatgcaaagagcatcagacatgtaaaccaaaaatagatatnnnnnnnggaaagggggagtaagcc |
117 |
Q |
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| T |
7107408 |
attcttgttgctggtaatttatttaataaactgatgatgcaaagagcatcagacatgtaaaccaaaaataggtatacaaaaagggaagggggactaagcc |
7107507 |
T |
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| Q |
118 |
aaaacgtttgaaccatttacaa-------------------aagcctcttattaaagaaatctgcactagtctgaggaggaatatgtaatgcattcaaac |
198 |
Q |
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| T |
7107508 |
aaaacctttcaaccatttacaaatctaaaacatggtaaatcaagcctcttattaaagaaatttgcactagtctgaggagga--atgtcatgcattcagat |
7107605 |
T |
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| Q |
199 |
aaaagagttaatgtataaattaata |
223 |
Q |
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| T |
7107606 |
aaaagagttaatggataaattaata |
7107630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 7107840 - 7107930
Alignment:
| Q |
248 |
aacaatttcattccctacagatatgagaaactatgaagttcatgttactggttaagcctaagcagctgttccacctgtctctgcttctcca |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||| |
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| T |
7107840 |
aacaatttcattccctacagatatgagaaactatgaagttcatgttactggttaagcctaagcagttgttccacctgtttatgattctcca |
7107930 |
T |
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