View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10525_low_1 (Length: 444)
Name: NF10525_low_1
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_1 |
 | |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 25 - 370
Target Start/End: Original strand, 18137184 - 18137529
Alignment:
| Q |
25 |
tccagtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcggaac |
124 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
18137184 |
tccagtaagtatgaaatttgagtgaatcggggctgccagcattgtatgaagatatcgtttatacaaactgctcactccaggaattgcaaagactcggaac |
18137283 |
T |
|
| Q |
125 |
gtagaataccacgctgcaggtgtgttacaattagaattctacactacctagagaatttggatattctattttctgaattattcttttgctaaactacgca |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18137284 |
gtagaataccacgctgcaggtgtgttacaattagaattctacactacctagagaatttggatattctattttctgaattattcttttgctaaaccacgca |
18137383 |
T |
|
| Q |
225 |
caaaattacttgttcatttcacattaatctatccatacttattcttttatatttatattcattttgcagtgatctgaagaagcatgtagaacaaagatca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18137384 |
taaaattacttgttcatttcacattaatctatccatacttattcttttatatttatattcattttgcagtgatctgaagaagcatgtagaacaaagatca |
18137483 |
T |
|
| Q |
325 |
atgcattctgagtcttgccgtagagcagtcgttggccaataaatca |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18137484 |
atgcattctgagtcttgccgtagagcagtcgttggccaataaatca |
18137529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 36846334 - 36846134
Alignment:
| Q |
21 |
tcattccagtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcg |
120 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||||| |
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|
| T |
36846334 |
tcatgccagtaagtgtgaaattcgagtgaatgggggctgccagcattgtaagaagatatggtttatactaactgctcactccagaaattgcaaagactcg |
36846235 |
T |
|
| Q |
121 |
gaacgtagaataccacgctgcaggtgtgttacaatta-gaattctacactacctagagaatttggatattctattttctgaattattcttttgctaaact |
219 |
Q |
| |
|
||| ||||||||||||| |||||||||||| |||||| |||||||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| |
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|
| T |
36846234 |
gaatgtagaataccacgttgcaggtgtgtttcaattaggaattctaaactgcctagagaattttgatattctattttctgaatcattcttttactaaact |
36846135 |
T |
|
| Q |
220 |
a |
220 |
Q |
| |
|
| |
|
|
| T |
36846134 |
a |
36846134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 6160784 - 6160436
Alignment:
| Q |
21 |
tcattccagtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcg |
120 |
Q |
| |
|
|||| |||||||||| ||||| || | ||| ||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||| |||||||| |
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|
| T |
6160784 |
tcatgccagtaagtgcaaaattcgattaaatgggggctgccagcattgtaaaaagatatggtttatactaacttctcactccaggaattgcaaagactcg |
6160685 |
T |
|
| Q |
121 |
gaacgtagaataccacgctgca-ggtgtgttacaattagaattctacactacctagagaatttggatattctattttctgaattattcttttgctaaact |
219 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||| |
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|
| T |
6160684 |
gaatgtagaataccacgctgcagggtgtgttacagttagaattctacactacctagagaatttcattattctattttatgcattattcttttactaaact |
6160585 |
T |
|
| Q |
220 |
acgcacaaaattacttgttcatttca---------cat---------taatctatccatacttattcttttatatttatattcattttgcagtgatctga |
301 |
Q |
| |
|
||| | | ||||| ||||||||| ||| |||||||| |||||||||||||||||| |||| || ||||||||||||| ||| |
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|
| T |
6160584 |
gtgcatagatatacttattcatttcaaaacagagtcatttttttggctaatctatgcatacttattcttttataattatgttgattttgcagtgatatga |
6160485 |
T |
|
| Q |
302 |
agaagcatgtagaacaaagatcaatgcattctgagtcttgccgtagagc |
350 |
Q |
| |
|
|||| ||||||||||| | |||| |||||||||| |||||| ||||||| |
|
|
| T |
6160484 |
agaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagc |
6160436 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 36846136 - 36846039
Alignment:
| Q |
253 |
ctatccatacttattcttttatatttatattcattttgcagtgatctgaagaagcatgtagaacaaagatcaatgcattctgagtcttgccgtagagc |
350 |
Q |
| |
|
|||| |||||||||||||||||||| || | ||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| |||||||| |
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|
| T |
36846136 |
ctatgcatacttattcttttatattgatgtcgattttgcagtgatttgaagaagcatgtagaacagaaatcaatgcattctgaatcttgacgtagagc |
36846039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 6160415 - 6160375
Alignment:
| Q |
347 |
gagcagtcgttggccaataaatcattgtgaatatatagagt |
387 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
6160415 |
gagcaatcgttggccaatgaatctttgtgaatatatagagt |
6160375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 26 - 350
Target Start/End: Original strand, 16820 - 17130
Alignment:
| Q |
26 |
ccagtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcggaacg |
125 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||||| || |||| |||||||| |||| | ||||||||||||||| ||||||| ||| | |
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|
| T |
16820 |
ccagtaagtgcaaaattcgagtgaat-ggggctgccagcattgtaaaaaaatatggtttatactaactacgcactccaggaattgcaaagactcagaatg |
16918 |
T |
|
| Q |
126 |
tagaataccacgctgcaggtgtgttacaattagaattctacactacctagagaatttggatattctattttctgaattattcttttgctaaactacgcac |
225 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| | |||||| ||| |
|
|
| T |
16919 |
tagaataccgcgttgcaggtgtgttacaattagaattctacactgcctagagaattttgatattctactttctgacttattcttttac-aaactatgcat |
17017 |
T |
|
| Q |
226 |
aaaattacttgttcatttcacattaatctatccatacttattcttttatatttatattcattttgcagtgatctgaagaagcat---gtagaacaaagat |
322 |
Q |
| |
|
||| |||| |||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
17018 |
aaatttac---------------taatctatgaatacttatgcttttatattgatattgattttgcagtgatctgaagaagcatgtagtagaacagagat |
17102 |
T |
|
| Q |
323 |
caatgcattctgagtcttgccgtagagc |
350 |
Q |
| |
|
||||||||| ||| ||||| |||||||| |
|
|
| T |
17103 |
caatgcattatgaatcttgtcgtagagc |
17130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 6681344 - 6681689
Alignment:
| Q |
21 |
tcattccagtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcg |
120 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||| |||| ||| ||||||||||||||| |||||| |||||| | |
|
|
| T |
6681344 |
tcatgccagtaagtgtgaaattcgagctaatcgaggctgccagcattgtaaaaagatatggtttgtactaactgctcactccagaaattgcaaagacttg |
6681443 |
T |
|
| Q |
121 |
gaacgtagaataccacgctgcaggtgtgttacaattagaattcta-cactacctagagaatttggatattctattttctgaattattcttttgctaaact |
219 |
Q |
| |
|
||| |||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| || ||||| |||||| |
|
|
| T |
6681444 |
gaatgtagaataccgcgttgcaggtgtgttacaattagaattctaccacctcctaaagaatttggatattctattttctaaatttttattttgataaact |
6681543 |
T |
|
| Q |
220 |
acgcacaaaattacttgttcatttcaca-----------------ttaatctatccatacttattcttttatatttatattcattttgcagtgatctgaa |
302 |
Q |
| |
|
| ||| ||| ||||| ||| ||||||| |||||||| ||||||||| |||||||||||| | ||||| |||||||||||| |
|
|
| T |
6681544 |
atgcataaatatacttattcctttcacaacagagtcattttttggctaatctatgaatacttattattttatatttatgtcgatttttcagtgatctgaa |
6681643 |
T |
|
| Q |
303 |
gaagcatgtagaacaaagatcaatgcattctgagtcttgccgtaga |
348 |
Q |
| |
|
||||||| | ||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
6681644 |
gaagcatttcgaaaagagatcaatgcattctgagtctagccgtaga |
6681689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 6771711 - 6771529
Alignment:
| Q |
29 |
gtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcggaacgtag |
128 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| ||||||||| ||||||| |||||||| ||| | ||||||||| ||||| ||||||||||| |||| |
|
|
| T |
6771711 |
gtaagtgcaaaattcgagtgaatgggggctgcccgcattgtaaaaagatatggtttatactaacaacgcactccagggattgcaaagactcggaatgtag |
6771612 |
T |
|
| Q |
129 |
aataccacgctgcaggtgtgttacaattagaattctacactacctagagaatttggatattctattttctgaattattctttt |
211 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
6771611 |
aataccgcgttgcaggtgtgttacaattagaattctacactgcctagagaattttgatattctactttctgacttattctttt |
6771529 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 6771540 - 6771448
Alignment:
| Q |
261 |
acttattcttttatatttatattcattttgcagtgatctgaagaagcat---gtagaacaaagatcaatgcattctgagtcttgccgtagagc |
350 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||| |||||||| |
|
|
| T |
6771540 |
acttattcttttatattgatgttgattttgcagtgatctgaagaagcatgtagtagaacggagatcaatgcattcttaatcttgtcgtagagc |
6771448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 49883684 - 49883830
Alignment:
| Q |
37 |
gaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcggaacgtagaataccac |
136 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| ||||| ||||||| |||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
49883684 |
gaaattcgagtaaatcggggctgtcagcactgtaaaaagatatggtttatactaactgcccactccaggaattgcaaagactcggaatgtagaataccac |
49883783 |
T |
|
| Q |
137 |
gctgcaggtgtgttacaattagaattctacactacctagagaatttg |
183 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
49883784 |
gttgcaggtgtgttactgttagaattctacactacctatagaatttg |
49883830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 46524079 - 46524241
Alignment:
| Q |
21 |
tcattccagtaagtgtgaaatttgagtgaatcggggctgccagcattgtaagaagatatcgtttatacaaactgctcactccaggaattgctaagactcg |
120 |
Q |
| |
|
|||| |||||| ||| |||||| |||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
46524079 |
tcatgccagtaggtgcgaaattcgagtgaatcggggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcg |
46524178 |
T |
|
| Q |
121 |
gaacgtagaataccacgctgcaggtgtgttacaattagaattctacactacctagagaatttg |
183 |
Q |
| |
|
|| |||| || ||||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
46524179 |
gagtgtagcattccacggtgcaggtgtgttgtttttagaattatacactacctagagaatttg |
46524241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 2943596 - 2943539
Alignment:
| Q |
259 |
atacttattc-ttttatatttatattcattttgcagtgatctgaagaagcatgtagaa |
315 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
2943596 |
atacttattcattttatatttatgtcgattttgcagggatctgaagaagcatatagaa |
2943539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 49883947 - 49883992
Alignment:
| Q |
270 |
tttatatttatattcattttgcagtgatctgaagaagcatgtagaa |
315 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||| ||||| |
|
|
| T |
49883947 |
tttatatttattttgattttgcagggatctgaagaagcatatagaa |
49883992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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