View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10525_low_12 (Length: 253)

Name: NF10525_low_12
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10525_low_12
NF10525_low_12
[»] chr7 (1 HSPs)
chr7 (1-236)||(44111971-44112207)
[»] chr2 (2 HSPs)
chr2 (1-60)||(24324327-24324386)
chr2 (154-235)||(24324482-24324563)
[»] chr1 (2 HSPs)
chr1 (153-235)||(47723007-47723089)
chr1 (153-235)||(47729999-47730081)
[»] chr8 (1 HSPs)
chr8 (174-235)||(16797267-16797328)
[»] chr3 (2 HSPs)
chr3 (147-235)||(36153989-36154077)
chr3 (4-60)||(38896854-38896910)
[»] chr4 (1 HSPs)
chr4 (153-235)||(13102897-13102979)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44111971 - 44112207
Alignment:
Q  1 ataaatgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtgtgttggccatttatatattcattgcatgannnnnnnn-at 99  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||         ||    
T  44111971 ataaatgagctttgtttgaaataccacacttacatggtcgaaatggacgttgactatgtgtgttagccatttatttattcattgcatgatttttttttat 44112070  T
Q  100 ttctcatgttggatttaattgtgtgcatatatgaattacaacatctttttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaaga 199  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112071 ttcacatgttggatttaattgtgtgcatatatgaattacaacatctttttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaaga 44112170  T
Q  200 ccagatccaacaatatgcaacgttggtggatccaaag 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  44112171 ccagatccaacaatatgcaacgttggtggatccaaag 44112207  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24324327 - 24324386
Alignment:
Q  1 ataaatgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtg 60  Q
    |||||||| |||||||||||||||||||| || ||||| || ||||||||||| ||||||    
T  24324327 ataaatgaccttcgtttgaaataccgcacctatatggttgagatggacgttgattatgtg 24324386  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 24324482 - 24324563
Alignment:
Q  154 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 235  Q
    |||||||| | ||| |||| |||||||| ||| |||| |||| ||||||||| || |||| ||||||  |||||||||||||    
T  24324482 agggtgcaataatgattcctatgatgttttcgaatgattttggagaccagatgcagcaatgtgcaactctggtggatccaaa 24324563  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 47723007 - 47723089
Alignment:
Q  153 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 235  Q
    ||||||||  ||||| | || |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||||||||||||    
T  47723007 cagggtgctattatgttgcccatgatgttttcccatgattttggagaccagatccaacaatatgctactctggtggatccaaa 47723089  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 47729999 - 47730081
Alignment:
Q  153 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 235  Q
    ||||||||  ||||| | ||||||||||| || ||||| |||| ||||||||||||||||||||| ||  |||| ||||||||    
T  47729999 cagggtgctattatgatgccaatgatgttttcccatgattttggagaccagatccaacaatatgctactctggtagatccaaa 47730081  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 16797267 - 16797328
Alignment:
Q  174 atgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 235  Q
    |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||||||||||||    
T  16797267 atgatgttttcccatgattttggagaccagatccaacaatatgctactctggtggatccaaa 16797328  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 36153989 - 36154077
Alignment:
Q  147 tttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 235  Q
    ||||| ||||||||  ||||||| ||||||||||| || ||||| |||| |||||||||||| ||||| || ||  |||| ||||||||    
T  36153989 tttacacagggtgctattatgctgccaatgatgttttcccatgattttggagaccagatccatcaatacgctactctggtagatccaaa 36154077  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 38896910 - 38896854
Alignment:
Q  4 aatgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtg 60  Q
    ||||| |||||||||||||||||||| || ||||| || ||||||||||| ||||||    
T  38896910 aatgaccttcgtttgaaataccgcacctatatggttgagatggacgttgattatgtg 38896854  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 13102979 - 13102897
Alignment:
Q  153 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 235  Q
    ||||||||  ||||| | || |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||| ||||||||    
T  13102979 cagggtgctattatgttgcctatgatgttttcccatgattttggagaccagatccaacaatatgctactctggttgatccaaa 13102897  T

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