View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10525_low_13 (Length: 250)

Name: NF10525_low_13
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10525_low_13
NF10525_low_13
[»] chr4 (2 HSPs)
chr4 (1-240)||(30251516-30251754)
chr4 (183-232)||(50655201-50655250)
[»] chr1 (5 HSPs)
chr1 (167-240)||(9644274-9644347)
chr1 (183-240)||(21926538-21926595)
chr1 (1-52)||(36982406-36982457)
chr1 (183-240)||(13297512-13297569)
chr1 (183-232)||(51871122-51871171)
[»] chr3 (2 HSPs)
chr3 (181-240)||(34213065-34213124)
chr3 (184-232)||(41640744-41640792)
[»] chr7 (2 HSPs)
chr7 (183-232)||(33743391-33743440)
chr7 (167-239)||(23177021-23177092)
[»] chr8 (1 HSPs)
chr8 (183-235)||(42241351-42241403)
[»] chr5 (1 HSPs)
chr5 (183-240)||(3465421-3465478)
[»] chr6 (1 HSPs)
chr6 (183-235)||(12834034-12834086)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30251754 - 30251516
Alignment:
Q  1 ttagacatgtagcaacgaaaaaactcttagtgagagtttgtcatccatttaggtgtcataagactcgagagacaactgcgataacggaggatatccgatt 100  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||    
T  30251754 ttagacatgtagcaacgaaataactcttagtgagagtttgccatccatttaggtgtcataagattcgagagacagctgcgataacggaggatatccggtt 30251655  T
Q  101 tacaccaaaactnnnnnnnnngactcattttctttataaatgggtggaatggacttccacagtgacattaggtcttctcttagtttgacatgctgttatt 200  Q
    |||||||||||           | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30251654 tacaccaaaacaaaaacaaaaaa-tcattttctttataaatgggtggattggacttccacagtgacattaggtcttcttttagtttgacatgctgttatt 30251556  T
Q  201 tggaccatttggatgtcccgaaacgaccttattttctctg 240  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  30251555 tggaccatttggacgtcctgaaacgaccttattttctctg 30251516  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 50655250 - 50655201
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 232  Q
    ||||| |||||||||||||||||||| |||| |||||| || ||||||||    
T  50655250 gtttggcatgctgttatttggaccatctggacgtcccgtaatgaccttat 50655201  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 9644274 - 9644347
Alignment:
Q  167 attaggtcttctcttagtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 240  Q
    ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  9644274 attaggtctccttttagtttgacatgttgttatttggaccatctggatgtcccggaacgaccttatcttctctg 9644347  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 21926538 - 21926595
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 240  Q
    |||||||||||| ||||||||||||||||| ||||  | ||| |||||||||||||||    
T  21926538 gtttgacatgctattatttggaccatttgggtgtctaggaacaaccttattttctctg 21926595  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36982406 - 36982457
Alignment:
Q  1 ttagacatgtagcaacgaaaaaactcttagtgagagtttgtcatccatttag 52  Q
    ||||||||| | |||||  ||||||||||| |||||||||||||||||||||    
T  36982406 ttagacatgcaacaacgttaaaactcttagggagagtttgtcatccatttag 36982457  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 13297512 - 13297569
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 240  Q
    ||||| |||||||||| |||||||||||||| ||||   || ||||||||||||||||    
T  13297512 gtttggcatgctgttaattggaccatttggacgtccttgaatgaccttattttctctg 13297569  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 51871122 - 51871171
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 232  Q
    ||||| ||||||||||| ||||||||||||| | ||||||| ||||||||    
T  51871122 gtttggcatgctgttatctggaccatttggacgacccgaaatgaccttat 51871171  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 34213065 - 34213124
Alignment:
Q  181 tagtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 240  Q
    ||||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  34213065 tagtttgccatgatgttatatggaccatttggacgtcccaaaacgaccttattttctctg 34213124  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 41640744 - 41640792
Alignment:
Q  184 tttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 232  Q
    |||| |||||||||||||| ||||||||| ||| ||| |||||||||||    
T  41640744 tttggcatgctgttatttgaaccatttgggtgttccggaacgaccttat 41640792  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 33743391 - 33743440
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 232  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  33743391 gtttggcatgctgttatttggaccatttgggcgtcccgaaacgaccttat 33743440  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 23177092 - 23177021
Alignment:
Q  167 attaggtcttctcttagtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctct 239  Q
    ||||||||||||  | |||||||||| ||||||||||||||| |||| ||| || |||| |||||||||||||    
T  23177092 attaggtcttcttctggtttgacatgttgttatttggaccatctggacgtctcggaacg-ccttattttctct 23177021  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 42241403 - 42241351
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttatttt 235  Q
    |||||||||||||||||||| ||||| ||||  ||| ||||||||||||||||    
T  42241403 gtttgacatgctgttatttgaaccatctggacatccagaaacgaccttatttt 42241351  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 3465478 - 3465421
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 240  Q
    |||||||||| ||||||||||||||| | ||  ||| |||||||||||||||| ||||    
T  3465478 gtttgacatgttgttatttggaccatctagacatccagaaacgaccttattttttctg 3465421  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 12834086 - 12834034
Alignment:
Q  183 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttatttt 235  Q
    ||||| |||||||||||||||||||| ||||||| ||| || || ||||||||    
T  12834086 gtttggcatgctgttatttggaccatctggatgttccggaatgatcttatttt 12834034  T

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