View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_low_18 (Length: 229)
Name: NF10525_low_18
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 37442143 - 37442325
Alignment:
| Q |
6 |
agttctgagttgaaatcatcttctaaattccatttagtaaacaatgcaaacaaaaatggaggtcaagtttttggtgataacaagaggaaagtcttcactg |
105 |
Q |
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| T |
37442143 |
agttctgagttgaattcatcttctaaattccatttagtaaacaatgcaaacaaaaatggagatcaagtttttggtgataacaagaggaaagtcttcactg |
37442242 |
T |
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| Q |
106 |
gtcctaatcctctacacaacagataagttaattattatctgcagagacaacaaatccactaccatttctatcctcaatccatg |
188 |
Q |
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| T |
37442243 |
gtcctaatcctctacacaacagataagttaattattatctgcagagacaacaaatccactaccatttctatcctcaatccatg |
37442325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 34939946 - 34940106
Alignment:
| Q |
20 |
atcatcttctaaattccatttagtaaacaatgcaaacaaaaatggaggtcaagtttttggtgataacaagaggaaagtcttcactggtcctaatcctcta |
119 |
Q |
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|||||| |||| ||||||| || ||||||||||||||||||||||| |||||||||||||||| | ||||||||||| | ||||||||| ||||||||| |
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| T |
34939946 |
atcatcatctagattccatgaaggaaacaatgcaaacaaaaatggagatcaagtttttggtgatgaaaagaggaaagtgtacactggtccaaatcctcta |
34940045 |
T |
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| Q |
120 |
cacaacagataagttaattattatctgcagagacaacaaatccactaccatttctatcctcaatc |
184 |
Q |
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| T |
34940046 |
cacaacagataagttg----ttacctgtagagacaacaaatccacatccatttctgtcctcaatc |
34940106 |
T |
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