View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_low_19 (Length: 228)
Name: NF10525_low_19
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 33026021 - 33025834
Alignment:
| Q |
19 |
gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttac |
118 |
Q |
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| T |
33026021 |
gcgtgtttgacatgcgaagatgtttttaagcgaatttgg-atcagaaactaacgaattgaatgacttgcataggcatcgaagttgaatgaggagttttac |
33025923 |
T |
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| Q |
119 |
cgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaa |
207 |
Q |
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| T |
33025922 |
cgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagcggttgtagttagggttccggtggaggtaa |
33025834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 33019622 - 33019436
Alignment:
| Q |
21 |
gtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttaccg |
120 |
Q |
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| T |
33019622 |
gtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgactgacttgcagaggcatcgaagttgaataaggatttttaccg |
33019523 |
T |
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| Q |
121 |
ggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttccggtggaggtaa |
207 |
Q |
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| T |
33019522 |
ggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtgaaggtaa |
33019436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 33037519 - 33037365
Alignment:
| Q |
18 |
cgcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagtttta |
117 |
Q |
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| T |
33037519 |
cgcgtgtttgacatgcgaagatgtttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagtttta |
33037420 |
T |
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| Q |
118 |
ccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtgg |
172 |
Q |
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| T |
33037419 |
ccggaagtctgcatagaatttcagcgacgagatcaaacggaagagtgggtagtgg |
33037365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 33023599 - 33023429
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgaggagttttaccgggag |
124 |
Q |
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| T |
33023599 |
ttgacatgcgaaagtgtttctttgcgaatacgggatcacacattaacgaattgaaggacttgcaaagacattgaagttgaaggaggagtttcacagggat |
33023500 |
T |
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| Q |
125 |
tctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatgagtggttgttgttagggttc |
195 |
Q |
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| T |
33023499 |
tctacaaaggatttcagcaaggagatcaaatggaagagttgttagtggcggagcggatgttgttagagttc |
33023429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 2501533 - 2501458
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaag |
100 |
Q |
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| T |
2501533 |
ttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaagaattgaagaacttacaaaggcatcgaag |
2501458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 12217388 - 12217304
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaatgag |
109 |
Q |
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| T |
12217388 |
ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgag |
12217304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37758420 - 37758504
Alignment:
| Q |
19 |
gcgtgtttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttg |
103 |
Q |
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| T |
37758420 |
gcgtggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttg |
37758504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 24418155 - 24418235
Alignment:
| Q |
25 |
ttgacatgcgaagatgttttttagcgaatttgggatgagaaactaacgaattgaatgacttgcacaggcatcgaagttgaa |
105 |
Q |
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|||||| |||||| || || || ||||||||||||| ||| | ||| |||||||| |||||||| || || |||||||||| |
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| T |
24418155 |
ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaa |
24418235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 25869469 - 25869541
Alignment:
| Q |
79 |
atgacttgcacaggcatcgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatc |
151 |
Q |
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| T |
25869469 |
atgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttcagcgatgagatc |
25869541 |
T |
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