View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_low_2 (Length: 434)
Name: NF10525_low_2
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 244 - 420
Target Start/End: Original strand, 8112439 - 8112615
Alignment:
| Q |
244 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatct |
343 |
Q |
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| T |
8112439 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgtagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatct |
8112538 |
T |
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| Q |
344 |
ccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
420 |
Q |
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| T |
8112539 |
ccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
8112615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 297 - 418
Target Start/End: Original strand, 8107908 - 8108029
Alignment:
| Q |
297 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttgg |
396 |
Q |
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| T |
8107908 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaataagatcaattcccttttgaactattgatagaatttgg |
8108007 |
T |
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| Q |
397 |
cacaaagaggcaaaagaccaca |
418 |
Q |
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| T |
8108008 |
cacaaagaggcaaaagaccaca |
8108029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 8107805 - 8107863
Alignment:
| Q |
244 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
302 |
Q |
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| T |
8107805 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgcagtcaaaagt |
8107863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 8094219 - 8094302
Alignment:
| Q |
313 |
taagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggc |
397 |
Q |
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| T |
8094219 |
taagctttagatctttaaaatacagtaatctccaagaaa-aaaaattaagatcaatcatcttttgaactgttgatagaatttggc |
8094302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 8107567 - 8107636
Alignment:
| Q |
18 |
aatggtattttcaatgaaagaa---gatcgttacataggttgtttctgatctacaaaataaactcaaaac |
84 |
Q |
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| T |
8107567 |
aatggtattttcaatgaaagaattagatcgtcacatagcgtgtttctgatctacaaaataaactcaaaac |
8107636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 8112215 - 8112286
Alignment:
| Q |
18 |
aatggtattttcaatgaaagaa---gatcgttacataggttgtttctgatctacaaaataaactcaaaacgg |
86 |
Q |
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| T |
8112215 |
aatggtattttcaatgaaagaattagatcgtcacatagcgtgtttctgatctataaaataaactcaaaacgg |
8112286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 8093912 - 8093973
Alignment:
| Q |
23 |
tattttcaatgaaagaagatcgttacataggttgtttctgatctacaaaataaactcaaaac |
84 |
Q |
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| T |
8093912 |
tattttcaatgaaataagatcgtcgcatagcatgttcctgatctacaaaataaactcaaaac |
8093973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 8112373 - 8112420
Alignment:
| Q |
177 |
gttcgccggtcatggatagtccacccaaaaaagatagatggtcttgtag |
225 |
Q |
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| T |
8112373 |
gttcgcgggtcatggatagtc-acccaaaaaagatagatggtgttgtag |
8112420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 30878977 - 30878923
Alignment:
| Q |
248 |
tatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
302 |
Q |
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| T |
30878977 |
tatacaatttctatctatttgctaataaatcaagagatataacacagtcaaaagt |
30878923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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