View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10525_low_21 (Length: 216)

Name: NF10525_low_21
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10525_low_21
NF10525_low_21
[»] chr8 (16 HSPs)
chr8 (13-200)||(5568658-5568845)
chr8 (13-200)||(14403228-14403415)
chr8 (13-200)||(5598377-5598564)
chr8 (13-200)||(5636711-5636898)
chr8 (13-200)||(5624520-5624707)
chr8 (13-200)||(6313668-6313855)
chr8 (13-200)||(13164355-13164542)
chr8 (13-200)||(5547499-5547692)
chr8 (13-138)||(5562331-5562456)
chr8 (69-186)||(12178726-12178840)
chr8 (69-186)||(12190421-12190535)
chr8 (69-186)||(12423154-12423268)
chr8 (69-186)||(12434849-12434963)
chr8 (21-196)||(32632656-32632822)
chr8 (167-199)||(5562473-5562505)
chr8 (13-85)||(5572781-5572853)
[»] scaffold0363 (1 HSPs)
scaffold0363 (13-200)||(15438-15625)
[»] chr2 (3 HSPs)
chr2 (30-136)||(19496002-19496108)
chr2 (78-118)||(16334755-16334795)
chr2 (67-123)||(17660989-17661045)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 5568658 - 5568845
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5568658 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaa 5568757  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5568758 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacattggtgtgattcctgtgttctaccatgttgacccttca 5568845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 14403228 - 14403415
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    ||||||| |||||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||    
T  14403228 gagatgatgtttggtcagaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaa 14403327  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| |||||| ||||||||||  |||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  14403328 cgaactggttgaaataatggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttca 14403415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 5598564 - 5598377
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    |||||||||||||| |||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5598564 gagatgaagtttggtcagaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaa 5598465  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| ||| || ||||||||||  ||||||||||||| || |||||||||| ||| |||||||| || ||||||||||||||||||    
T  5598464 cgaactcgttcaaataatggagtgtggtaacaaaaatgaggatgacaacgttgttgtcattcctgttttttaccatgttgacccttca 5598377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 5636711 - 5636898
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    |||||||||||||| |||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5636711 gagatgaagtttggtcagaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaa 5636810  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| ||| || ||||||||||  ||||||||||||| || |||||||||| ||| |||||||| || ||||||||||||||||||    
T  5636811 cgaactcgttcaaataatggagtgtggtaacaaaaatgaggatgacaacgttgttgtcattcctgttttttaccatgttgacccttca 5636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 5624520 - 5624707
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||| |||||||| || || ||||||| |||||||||    
T  5624520 gagatgaagtttgggcagaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaa 5624619  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| ||| || ||||||||||   ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  5624620 cgaactcgttcaaataatggagtgtaataacaaaaatgaagatgacaatgttgttgttattcctgtgttctaccatgttgacccttca 5624707  T

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Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 6313855 - 6313668
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    ||||||||||||||  |||||| | |||||||||||||||||| ||| | |||||||| |||||||| || |||||||| |||||||||| |||||||||    
T  6313855 gagatgaagtttgggtagaactagtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaa 6313756  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     |||||||||||| ||||||||||  |||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||||    
T  6313755 cgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaggttgttgttattccagtgttctaccatgttgacccttca 6313668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 13164355 - 13164542
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    ||||||||||||||  ||||||| |||||||||||||  |||| ||||| |||||||| ||||||||||||||||| || | |||||||| |||||||||    
T  13164355 gagatgaagtttggggagaacttcagaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaa 13164454  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| ||| || ||||||||||  | ||||| |||||| | || ||||||| ||||||||||||||||||||||||||||||||||    
T  13164455 cgaactagttcaaataatggagtgtagcaacaacaatgaaaatgataacgttgttgttattcctgtgttctaccatgttgacccttca 13164542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 5547499 - 5547692
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    ||||| |||||||| ||||||||| ||| ||||| |||||||| ||| |||||||||| ||||||||  ||||||| || |||||||||| |||||||||    
T  5547499 gagatcaagtttgggcagaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcgaagaactacgcatcttcaacatggtgtttgaa 5547598  T
Q  113 tgaacttgttgaactaatggagtg------ccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| |||||  |||||||||       |  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  5547599 cgaactggttgagataatggagttattcgacattaacaaaaatgaagatgacaacgttgttgttattcctgtgttctaccatgttgacccttca 5547692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 5562331 - 5562456
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    |||||||||||||| ||||||||| ||| ||||| |||||||| ||| |||||||||| |||||||| |||||||| || |||||||||| |||||||||    
T  5562331 gagatgaagtttgggcagaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaa 5562430  T
Q  113 tgaacttgttgaactaatggagtgcc 138  Q
    |||||| ||| || ||||||| ||||    
T  5562431 tgaactcgttcaaataatggaatgcc 5562456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 12178840 - 12178726
Alignment:
Q  69 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 168  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12178840 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12178744  T
Q  169 ttattcctgtgttctacc 186  Q
    ||||||||||||||||||    
T  12178743 ttattcctgtgttctacc 12178726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 12190535 - 12190421
Alignment:
Q  69 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 168  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12190535 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12190439  T
Q  169 ttattcctgtgttctacc 186  Q
    ||||||||||||||||||    
T  12190438 ttattcctgtgttctacc 12190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 12423268 - 12423154
Alignment:
Q  69 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 168  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12423268 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12423172  T
Q  169 ttattcctgtgttctacc 186  Q
    ||||||||||||||||||    
T  12423171 ttattcctgtgttctacc 12423154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 12434963 - 12434849
Alignment:
Q  69 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 168  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12434963 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12434867  T
Q  169 ttattcctgtgttctacc 186  Q
    ||||||||||||||||||    
T  12434866 ttattcctgtgttctacc 12434849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 32632656 - 32632822
Alignment:
Q  21 gtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttg 120  Q
    |||||| ||||||||  |||||||||||||||||| ||| | ||| | || ||||||||  |||||||||| |||||||||| ||||||||| ||||| |    
T  32632656 gtttgggcagaacttacgaaagcaatcaaacaatccactatctttttggtagtgttctcgaagaactatgcgtcttcaacatggtgtttgaacgaactcg 32632755  T
Q  121 ttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgaccc 196  Q
    ||||| ||||||||||  ||||||||         |||||||||| ||||||||||||||| |||||| |||||||    
T  32632756 ttgaaataatggagtgtagtaacaaa---------gacaacgttgctgttattcctgtgttttaccatattgaccc 32632822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 5562473 - 5562505
Alignment:
Q  167 tgttattcctgtgttctaccatgttgacccttc 199  Q
    ||||| |||||||||||||||||||||||||||    
T  5562473 tgttaatcctgtgttctaccatgttgacccttc 5562505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 5572781 - 5572853
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaa 85  Q
    |||||||||||||| |||||||   ||||||||||||  | || ||| |||||||||| |||||||| |||||    
T  5572781 gagatgaagtttggacagaactcttgaaagcaatcaaggattccactttgtttcttgtcgtgttctcggagaa 5572853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 15625 - 15438
Alignment:
Q  13 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 112  Q
    ||||||| |||||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||    
T  15625 gagatgatgtttggtcagaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaa 15526  T
Q  113 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctaccatgttgacccttca 200  Q
     ||||| |||||| ||||||||||  |||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  15525 cgaactggttgaaataatggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttca 15438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 19496108 - 19496002
Alignment:
Q  30 gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaa 129  Q
    ||||||| ||||||||| ||  |||||||||| ||||| || ||||||||||||||||| ||   ||| |  | ||||||| |||||||||||||| |||    
T  19496108 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattccagttggtgtttggatgaacttgttgaaataa 19496009  T
Q  130 tggagtg 136  Q
    || ||||    
T  19496008 tgaagtg 19496002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 16334755 - 16334795
Alignment:
Q  78 tcagagaactatgcttcttcaacattgtgtttgaatgaact 118  Q
    ||||| |||||||||||||||| || |||||||||||||||    
T  16334755 tcagaaaactatgcttcttcaaaatggtgtttgaatgaact 16334795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 17660989 - 17661045
Alignment:
Q  67 ttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttg 123  Q
    ||||||| |||||  | ||||||||||| ||||| || |||||||||||||||||||    
T  17660989 ttgttgttttctctaacaactatgcttcctcaactttttgtttgaatgaacttgttg 17661045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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