View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_low_22 (Length: 215)
Name: NF10525_low_22
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 36206820 - 36207029
Alignment:
| Q |
6 |
aggtgtccccattttctttgtcattctcagcttccaaaatatcaaacgagttatgtagctcaagactttggtcctccaaagcttcttgtgctccttggga |
105 |
Q |
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| T |
36206820 |
aggtgtccccattttctttgtcattctcagcttccaaaatatcaaacgagttatgtagctcaagactttggtcctccaaagcttcttgtgctccttggga |
36206919 |
T |
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| Q |
106 |
cctgtaagcatagtttgggcagtaagtgttttagcttgagtgttgttcctagctagtagatgttatgtggcttcgtgcataaccattggtgatgttgtag |
205 |
Q |
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| T |
36206920 |
cctgtaagcatagtttgggcagtaagtgttttagcttgagtgttgttcctagctagtagatgttatgtggcttcgtgcataaccattggtgatgttgtag |
36207019 |
T |
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| Q |
206 |
catgagtgac |
215 |
Q |
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| T |
36207020 |
catgagtgac |
36207029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 400312 - 400394
Alignment:
| Q |
16 |
attttctttgtcattctcagcttccaaaatatcaaacgagttatgtagctcaagactttggtcctccaaagcttcttgtgctc |
98 |
Q |
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| T |
400312 |
attttccttgtcattctcatcctccaaaatatcaaaagagttacgcagctgaagactttgatcagccaaatcttcttgagctc |
400394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 400572 - 400621
Alignment:
| Q |
164 |
gatgttatgtggcttcgtgcataaccattggtgatgttgtagcatgagtg |
213 |
Q |
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| T |
400572 |
gatgttgtgtggcttcttacataaccattggtgatgttggagcaggagtg |
400621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 10989487 - 10989405
Alignment:
| Q |
11 |
tccccattttctttgtcattctcagcttccaaaatatcaaacgagttatgtagctcaagactttggtcctccaaagcttcttg |
93 |
Q |
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| T |
10989487 |
tccccattttccttgtcattttcaacttccaaaatatcaaacgagttatgaagctcaagactttgatcctccaaagcttcttg |
10989405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 10989369 - 10989261
Alignment:
| Q |
107 |
ctgtaagcatagtttgggcagtaagtgttttagcttgagtgttgttcctagctagtagatgttatgtggcttcgtgcataaccattggtgatgttgtagc |
206 |
Q |
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| T |
10989369 |
ctgtaatcatagtttgggcagtatgtgttttggcttgattgttgttccttggtatcagatgttgtgtggcttcttgcgtatccatttgagatgttgtagc |
10989270 |
T |
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| Q |
207 |
atgagtgac |
215 |
Q |
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| T |
10989269 |
ataagtgac |
10989261 |
T |
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