View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10525_low_25 (Length: 210)

Name: NF10525_low_25
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10525_low_25
NF10525_low_25
[»] chr5 (5 HSPs)
chr5 (51-193)||(27734986-27735136)
chr5 (81-193)||(1895419-1895530)
chr5 (54-146)||(27734267-27734367)
chr5 (81-146)||(1896096-1896161)
chr5 (51-88)||(25744723-25744760)
[»] scaffold0126 (1 HSPs)
scaffold0126 (51-146)||(34460-34563)
[»] chr4 (3 HSPs)
chr4 (53-146)||(46575599-46575700)
chr4 (52-88)||(49480627-49480663)
chr4 (52-88)||(52304510-52304546)
[»] chr3 (3 HSPs)
chr3 (50-89)||(18388496-18388535)
chr3 (51-88)||(22272389-22272426)
chr3 (51-87)||(53232995-53233031)
[»] chr7 (3 HSPs)
chr7 (50-88)||(15134472-15134510)
chr7 (50-88)||(32498423-32498461)
chr7 (50-87)||(13783065-13783102)
[»] chr8 (1 HSPs)
chr8 (50-87)||(36696695-36696732)
[»] chr6 (1 HSPs)
chr6 (51-88)||(21350319-21350356)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 27735136 - 27734986
Alignment:
Q  51 gggatgtatcaaatgagaggagtggttattgtgagagg--------agtaaatatagacctttagatctaaatgaatggtacagattaaaagatccactt 142  Q
    |||||||||||||||||| |||||||||||||||||||        |||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  27735136 gggatgtatcaaatgagatgagtggttattgtgagagggtgagaggagtaaatataaacctttagatttaaatgaatggtgcagattaaaagatccactt 27735037  T
Q  143 aaaagtttcatgtgccttcttttctatcttccaacgcgcctccttcttcct 193  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  27735036 aaaagtttcacgtgccttcttttctatctttcaacgcgcctccttcttcct 27734986  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 1895419 - 1895530
Alignment:
Q  81 gtgagaggagtaaatatagacctttagatctaaatgaatggtacagattaaaagatccacttaaaagtttcatgtgccttcttttctatcttccaacgcg 180  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||| ||| || |||||||    
T  1895419 gtgagaggagtaaatatagacctttagatctaaatgaatagtgcagattaaaagatccacttaaaagtttcacgtgcctt-ttttttatgtttcaacgcg 1895517  T
Q  181 cctccttcttcct 193  Q
     ||||||||||||    
T  1895518 tctccttcttcct 1895530  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 27734267 - 27734367
Alignment:
Q  54 atgtatcaaatgagaggagtggttattgtga--------gaggagtaaatatagacctttagatctaaatgaatggtacagattaaaagatccacttaaa 145  Q
    ||||||||||||||||||||| |||||||||        ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  27734267 atgtatcaaatgagaggagtgattattgtgagagggtgagaggagtaaatatcgacctttagatctaaatgaatggtgcagattaaaagatccacttaaa 27734366  T
Q  146 a 146  Q
    |    
T  27734367 a 27734367  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 1896161 - 1896096
Alignment:
Q  81 gtgagaggagtaaatatagacctttagatctaaatgaatggtacagattaaaagatccacttaaaa 146  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1896161 gtgaaaggagtaaatatagacctttagatctaaatgaatggtgtagattaaaagatccacttaaaa 1896096  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 25744723 - 25744760
Alignment:
Q  51 gggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  25744723 gggatgtttcaaatgagaggagtggttattgtgagagg 25744760  T

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Target: scaffold0126 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 34563 - 34460
Alignment:
Q  51 gggatgtatcaaatgagaggagtggttattgtgagagg--------agtaaatatagacctttagatctaaatgaatggtacagattaaaagatccactt 142  Q
    ||||||||| ||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  34563 gggatgtattaaatgagaggagtggttattgtgagagggtgagaggagtaaatatagaccattagatctaaatgaatggtgcagattaaaagatccactt 34464  T
Q  143 aaaa 146  Q
    ||||    
T  34463 aaaa 34460  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 46575599 - 46575700
Alignment:
Q  53 gatgtatcaaatgagaggagtggttattgtgagagg--------agtaaatatagacctttagatctaaatgaatggtacagattaaaagatccacttaa 144  Q
    |||| ||||||||||||||||| |||||||||||||        |||||||| | ||||| | ||||||||||||||| ||||| ||||| |||||||||    
T  46575599 gatgcatcaaatgagaggagtgattattgtgagagggtaagagaagtaaatacaaaccttcaaatctaaatgaatggtgcagatgaaaagttccacttaa 46575698  T
Q  145 aa 146  Q
    ||    
T  46575699 aa 46575700  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 49480663 - 49480627
Alignment:
Q  52 ggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    |||||||| ||||||||||||||||||||||||||||    
T  49480663 ggatgtattaaatgagaggagtggttattgtgagagg 49480627  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 52304510 - 52304546
Alignment:
Q  52 ggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52304510 ggatgtatcaaatgagaggagttgttattgtgagagg 52304546  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 18388535 - 18388496
Alignment:
Q  50 ggggatgtatcaaatgagaggagtggttattgtgagagga 89  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  18388535 ggggatgtatcaaatgagaggagatgttattgtgagagga 18388496  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 22272426 - 22272389
Alignment:
Q  51 gggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  22272426 gggatgtatcaagtgagaggagtggttattatgagagg 22272389  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 53233031 - 53232995
Alignment:
Q  51 gggatgtatcaaatgagaggagtggttattgtgagag 87  Q
    |||||||||||| |||||||||| |||||||||||||    
T  53233031 gggatgtatcaagtgagaggagtagttattgtgagag 53232995  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 15134510 - 15134472
Alignment:
Q  50 ggggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  15134510 ggggatgtttcaaatgagaggagtggatattgtgagagg 15134472  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 32498461 - 32498423
Alignment:
Q  50 ggggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  32498461 ggggatgtatcaaatgagatgagtggttattatgagagg 32498423  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 13783102 - 13783065
Alignment:
Q  50 ggggatgtatcaaatgagaggagtggttattgtgagag 87  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  13783102 ggggatgtatcaaatgagaggagtgtttaatgtgagag 13783065  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 36696695 - 36696732
Alignment:
Q  50 ggggatgtatcaaatgagaggagtggttattgtgagag 87  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  36696695 ggggatgtatcaaatgagaggagtgtttaatgtgagag 36696732  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 21350319 - 21350356
Alignment:
Q  51 gggatgtatcaaatgagaggagtggttattgtgagagg 88  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  21350319 gggatgtatcaaatgcgaggagtggttattatgagagg 21350356  T

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