View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10525_low_4 (Length: 387)

Name: NF10525_low_4
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10525_low_4
NF10525_low_4
[»] chr7 (19 HSPs)
chr7 (110-387)||(4783885-4784162)
chr7 (110-387)||(4816314-4816591)
chr7 (9-312)||(4636530-4636827)
chr7 (115-315)||(4630700-4630900)
chr7 (110-354)||(4863690-4863934)
chr7 (192-315)||(4672526-4672649)
chr7 (101-282)||(4666694-4666875)
chr7 (192-312)||(4643521-4643641)
chr7 (72-281)||(4712231-4712437)
chr7 (190-282)||(4697345-4697437)
chr7 (184-281)||(4846171-4846268)
chr7 (194-281)||(4653372-4653459)
chr7 (81-150)||(4846299-4846365)
chr7 (101-150)||(4643445-4643494)
chr7 (250-366)||(4662899-4663015)
chr7 (101-161)||(4672435-4672495)
chr7 (115-161)||(4697466-4697512)
chr7 (187-246)||(4647378-4647437)
chr7 (180-232)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (101-354)||(18925825-18926078)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 110 - 387
Target Start/End: Complemental strand, 4784162 - 4783885
Alignment:
Q  110 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 209  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  4784162 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcgaaa 4784063  T
Q  210 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4784062 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaccaaaggagcaccactccaccttatcac 4783963  T
Q  310 atcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  4783962 atcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatc 4783885  T

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Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 110 - 387
Target Start/End: Complemental strand, 4816591 - 4816314
Alignment:
Q  110 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 209  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  4816591 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcgaaa 4816492  T
Q  210 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcac 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4816491 gattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccatatcac 4816392  T
Q  310 atcagcagcatgttcagccaaactatcatctatgaaaatctgaaatcttctatcaccatcctgtttgatatgccaatc 387  Q
    |||||||  | ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  4816391 atcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatc 4816314  T

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Target: chr7; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 4636530 - 4636827
Alignment:
Q  9 agagagatgaaactccaactatgactatggttgacttcttggactttgattttttagatgaaagtataatgtgtttgttgggattcaaaccagcgagatt 108  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  4636530 agagagatgaaactccaactatgactacagttgacttcttggacttttgtttttgagatgatagtataatgtgtttgttgggattcaaaccagcgagatt 4636629  T
Q  109 gttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaa 208  Q
    ||||||||||||||| ||||| ||||||||||||||||| |   | ||||||||||| || |||||||| | || |||||||||||| |||||||| |||    
T  4636630 gttatatttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaa 4636729  T
Q  209 agattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatca 308  Q
    |||| |||| |||||||||||||| ||   || |      ||||||  ||  |||||||||||||||||||||| | | ||||||||||||||| |||||    
T  4636730 agataaactctttcaatttgagagattaatccct------ccatagaaacaacataatccttatgaacaggaaccatacgagcaccactccaccctatca 4636823  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 115 - 315
Target Start/End: Original strand, 4630700 - 4630900
Alignment:
Q  115 tttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagatta 214  Q
    ||||||||||||||| |||||||| |||||||||| |  |||||||||||| |  ||  | |||| || ||||  |||| | |||||||| |||||||||    
T  4630700 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatta 4630799  T
Q  215 actttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcag 314  Q
    ||| |||||||||||||||||||  |||||||   ||||  |||  ||||||||||||||  |||||| | | |||||||||||||||||||||||||||    
T  4630800 actctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccactccaccttatcacatcag 4630899  T
Q  315 c 315  Q
    |    
T  4630900 c 4630900  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 110 - 354
Target Start/End: Original strand, 4863690 - 4863934
Alignment:
Q  110 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 209  Q
    |||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||    |||  ||| |  ||||||||| |||||| ||||| |||||    
T  4863690 ttatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaa 4863789  T
Q  210 gattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcac 309  Q
    | |||||| |||||||||||||||||||  ||| |||    |||| ||| | ||||||||||||||||||||| | | ||| ||| ||||||| ||||||    
T  4863790 ggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcac 4863889  T
Q  310 atcagcagcatgttcagccaaactatcatctatgaaaatctgaaa 354  Q
    ||||||    |  ||||||| ||||| | ||||||||||||||||    
T  4863890 atcagcgttttcctcagccatactattaactatgaaaatctgaaa 4863934  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 4672526 - 4672649
Alignment:
Q  192 gttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagc 291  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||  |||||||   |||||| || ||||||||||||||||||||||| | | ||||    
T  4672526 gttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagc 4672625  T
Q  292 accactccaccttatcacatcagc 315  Q
    ||||||||| ||||| ||||||||    
T  4672626 accactccaacttataacatcagc 4672649  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 4666694 - 4666875
Alignment:
Q  101 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagct 200  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||| |    ||||||||  ||    |||   | || || ||||| |||||| ||||    
T  4666694 gcgagattgttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcactgtattttgtaaagacagtttctggtactcgttgaagct 4666793  T
Q  201 tgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaac 282  Q
    | || |||||||||||| |||||||||||  ||| || ||||||||| ||||||||| ||||||||||||||||||||||||    
T  4666794 taattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataatccttatgaacaggaac 4666875  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 4643521 - 4643641
Alignment:
Q  192 gttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagc 291  Q
    |||| |||||||| ||||||||| || |||||| ||||||||||||  ||||| |  |||||| ||  ||||||||||||||||||||||| ||| ||||    
T  4643521 gttgaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagc 4643620  T
Q  292 accactccaccttatcacatc 312  Q
    ||||||||||| |||||||||    
T  4643621 accactccaccctatcacatc 4643641  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 281
Target Start/End: Complemental strand, 4712437 - 4712231
Alignment:
Q  72 gtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgt 171  Q
    |||||||||||||| ||||||||||||||||||||   |||| ||||||||||||||| |||||||| ||||||||||   |||||||||| ||    ||    
T  4712437 gtataatgtgtttgatgggattcaaaccagcgaga---ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgt 4712341  T
Q  172 aggcatagattttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatcctta 271  Q
        |||  || ||||  |||||| ||||| || ||||| |||||| ||||||||| |||||||||   ||||||   |||  |||| ||||||||||||    
T  4712340 gtagatactttctggttctcgttgaagcttaattgaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatcctta 4712241  T
Q  272 tgaacaggaa 281  Q
    ||||||||||    
T  4712240 tgaacaggaa 4712231  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 4697437 - 4697345
Alignment:
Q  190 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaac 282  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||  |||||||   ||||| ||| |||||||| ||||||||||||||    
T  4697437 tcgttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaac 4697345  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 4846268 - 4846171
Alignment:
Q  184 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 281  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| |||||||||   ||||||    ||  |||| ||||||||||||||||||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaa 4846171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 4653372 - 4653459
Alignment:
Q  194 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa 281  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  ||| |||   |||||||||  |||||||||||||||||||||    
T  4653372 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatgaacaggaa 4653459  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 4846365 - 4846299
Alignment:
Q  81 gtttgttgggattcaaaccagcgagattgttatatttatcacttattttcaaaatctcgattccattcaa 150  Q
    ||||||||||||||| |||||| ||||||||   ||||||||||| ||| ||||||||||||||||||||    
T  4846365 gtttgttgggattcataccagccagattgtt---tttatcacttactttgaaaatctcgattccattcaa 4846299  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 4643445 - 4643494
Alignment:
Q  101 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaa 150  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  4643445 gcgagattgttatttttgtcacttatttttaaaatctcgattccattcaa 4643494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 366
Target Start/End: Original strand, 4662899 - 4663015
Alignment:
Q  250 catagtcacggcataatccttatgaacaggaacaaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatc 349  Q
    |||||||||  |||||||||||||||||||||| | | || ||  |||||||||||||||||| ||    | |||| | ||| |||||||||| ||||||    
T  4662899 catagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctataaaaatc 4662998  T
Q  350 tgaaatcttctatcacc 366  Q
    |||||  ||||||||||    
T  4662999 tgaaacattctatcacc 4663015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 4672435 - 4672495
Alignment:
Q  101 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcac 161  Q
    |||||||| |||| ||||||||||| ||| ||||||||||||||||| || ||||||||||    
T  4672435 gcgagattattatttttatcacttactttgaaaatctcgattccatttaatgtgacatcac 4672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 4697512 - 4697466
Alignment:
Q  115 tttatcacttattttcaaaatctcgattccattcaacgtgacatcac 161  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  4697512 tttatcatttattttcaaaatctcgatgccattcaatgtgacatcac 4697466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 4647378 - 4647437
Alignment:
Q  187 taatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgaga 246  Q
    ||||||||| |||||||| |||||||||||| |||||||||||   ||||| ||||||||    
T  4647378 taatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgaga 4647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 4661636 - 4661688
Alignment:
Q  180 attttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagag 232  Q
    |||||| |||| |||| |||||||| ||||||| |||| ||||||||||||||    
T  4661636 attttgataatggttgaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 354
Target Start/End: Complemental strand, 18926078 - 18925825
Alignment:
Q  101 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagct 200  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||| ||| ||    |     |||  || ||||  |||||||||||    
T  18926078 gcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttgagtagatattttctggtgctcgttgtagct 18925979  T
Q  201 tgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcaccactcca 300  Q
    | || |||||||||||| ||| |||||| ||||||||  || ||||   |||||||||  |||||||||||||||||||||| | | |||||||||||||    
T  18925978 ttattgaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacgagcaccactcca 18925879  T
Q  301 ccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaa 354  Q
        ||||||||||||    ||||||||||| |||||||||| |||||||||||    
T  18925878 atgaatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaa 18925825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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