View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_low_8 (Length: 285)
Name: NF10525_low_8
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 56045857 - 56046111
Alignment:
| Q |
20 |
aacgtcaaagtggatgtgcatggtaggctcatgaaggcttataagcaagtaccagaatggtggttcctcattttattatttggaagcatggcgctatcct |
119 |
Q |
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| T |
56045857 |
aacgtaaaagttgatgtgcatggtaggctcatgaaggcttataagcaagtaccagaatggtggttcctcattttattatttggaagcatggcgctatcct |
56045956 |
T |
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| Q |
120 |
tagtaatggcttttgtttggaaaacggatgtgcaacttccatggtggggcatgctctttgcttttggcttagcttttgttgtaactctcccaatcggtgt |
219 |
Q |
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| T |
56045957 |
tagtaatggcttttgtttggaaaacggatgtgcaacttccatggtggggcatgctctttgcttttggcttagcttttgttgtaactctcccaatcggtgt |
56046056 |
T |
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| Q |
220 |
catccaagcaactaccaaccaggtactaactccattcaatatttctgccacctat |
274 |
Q |
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| T |
56046057 |
catccaagcaactaccaaccaggtactaactccattcaatatttctgccacctat |
56046111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 55707250 - 55707400
Alignment:
| Q |
114 |
tatccttagtaatggcttttgtttggaaaacggatgtgcaacttccatggtggggcatgctctttgcttttggcttagcttttgttgtaactctcccaat |
213 |
Q |
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| T |
55707250 |
tatccatagtaatggcttt-gtgtggaaaacatatgtgcaactgctattgtggggtatgctctttgcttttggcttcgcttttgttgtaaccctcccaat |
55707348 |
T |
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| Q |
214 |
cggtgtcatccaagcaactaccaaccaggtactaactccattcaatatttct |
265 |
Q |
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| T |
55707349 |
cggtgtcatccaagcaactaccaaccaggcactaactccaatcaatatttct |
55707400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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