View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10525_low_9 (Length: 263)
Name: NF10525_low_9
Description: NF10525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10525_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 34926394 - 34926150
Alignment:
| Q |
3 |
actttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacacccctccaattcccatgaatatgactgcttcttctcgtccactagaaa |
102 |
Q |
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| T |
34926394 |
actttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacacccctccaattcccatgaatatgactgcttcttctcgtccactagaaa |
34926295 |
T |
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| Q |
103 |
attgagtttaagagcttacattacatgttttgtaagaaagtctaaattataacattattgattggtctgaaaatcaacgggacaattaggattctacatg |
202 |
Q |
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| T |
34926294 |
attgagtttaagagcttacattacatgttttgtaagaaagtctaaattataacattattgattggtctgaaaatcaacgggacaattaggattctacatg |
34926195 |
T |
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| Q |
203 |
tatgatgagaagttcaccaaataagatggctttaacagaaaatgc |
247 |
Q |
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| T |
34926194 |
tatgatgagaagttcaccaaataagatggctttaacagaaaatgc |
34926150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 34931301 - 34931094
Alignment:
| Q |
3 |
actttgatcagaaagccacctccccttcggaagttagaagtttgatcgaacaccc-ctccaattcccatgaatatgactgcttcttctcgtccactagaa |
101 |
Q |
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| T |
34931301 |
actttgatcagaaagccacctccctttcggaagttataagtttgattgaacgccctctccaattcccatgaatataactgcttcttctcattcgctagta |
34931202 |
T |
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| Q |
102 |
aattgagtttaagagcttacattacatgttttgtaagaaagtctaaattataacattattgattggtctgaaaatcaacgggacaattaggattctacat |
201 |
Q |
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| T |
34931201 |
aattgatcttaagagcttgcattacatgttccgtaa-------taatcaccaacattgttgattggtctgaaaatccacgggacaattaggattctacat |
34931109 |
T |
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| Q |
202 |
gtatgatgagaagtt |
216 |
Q |
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| T |
34931108 |
gtatagtgagaagtt |
34931094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 34919582 - 34919482
Alignment:
| Q |
57 |
cctccaattcccatgaatatgactgcttcttctcgtccactagaaaattgagtttaagagcttacattacatgttttgtaagaaagtctaaattataaca |
156 |
Q |
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|||||| ||||| ||||||| | || ||||| | ||| |||| |||||||||| ||||||||||||||| || | ||||||||||| ||| || ||||| |
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| T |
34919582 |
cctccacttcccgtgaatatcattgtttctttgcatccgctagcaaattgagttgaagagcttacattacttgatctgtaagaaagtgtaagttgtaaca |
34919483 |
T |
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| Q |
157 |
t |
157 |
Q |
| |
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| T |
34919482 |
t |
34919482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 34909696 - 34909662
Alignment:
| Q |
3 |
actttgatcagaaagccacctccccttcggaagtt |
37 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
34909696 |
actttgatcagaaagccacctccccttaggaagtt |
34909662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 34913958 - 34913917
Alignment:
| Q |
3 |
actttgatcagaaagccacctccccttcggaagttagaagtt |
44 |
Q |
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| T |
34913958 |
actttgatcagaaagccaccaccccttaggaagttggaagtt |
34913917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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