View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10526_2 (Length: 357)

Name: NF10526_2
Description: NF10526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10526_2
NF10526_2
[»] chr4 (14 HSPs)
chr4 (1-347)||(27412114-27412460)
chr4 (1-292)||(27570402-27570694)
chr4 (17-346)||(27422662-27422991)
chr4 (196-340)||(27415032-27415176)
chr4 (193-305)||(27425311-27425423)
chr4 (164-347)||(27566449-27566634)
chr4 (196-272)||(27419887-27419963)
chr4 (8-67)||(27566310-27566369)
chr4 (2-63)||(27563698-27563759)
chr4 (107-158)||(27420021-27420072)
chr4 (1-155)||(27415245-27415411)
chr4 (107-158)||(27566379-27566431)
chr4 (254-308)||(27564031-27564085)
chr4 (13-61)||(27425540-27425588)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 27412460 - 27412114
Alignment:
Q  1 cttgcagccatgaatatatatagataaaagaatattgagaaaccattggctacttgaatgatttgtggaggtttatactgtagtataggatcaggatgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27412460 cttgcagccatgaatatatatagataaaagaatattgagaaaccattggctacttgaatgattggtggaggtttatactgtagtataggatcaggatgga 27412361  T
Q  101 gtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27412360 gtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaatagaaa 27412261  T
Q  201 gtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaatataaaattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  27412260 gtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttacaaaaataaaaaattt 27412161  T
Q  301 ggttcatagtagctcaagttcttgtgttcaatatcggttcgcttctt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27412160 ggttcatagtagctcaagttcttgtgttcaatatcggttcgcttctt 27412114  T

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Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 27570402 - 27570694
Alignment:
Q  1 cttgcagccatgaatatatatagataaaagaata-ttgagaaaccattggctacttgaatgatttgtggaggtttatactgtagtataggatcaggatgg 99  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  27570402 cttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgattggtggaggtatatactgtagtataggatcaggatgg 27570501  T
Q  100 agtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27570502 agtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaatagaa 27570601  T
Q  200 agtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570602 agtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata 27570694  T

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Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 27422991 - 27422662
Alignment:
Q  17 tatatagataaaagaatattgagaaaccattggctacttgaatgatttgtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaa 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  27422991 tatatagataaaagaattttgagaaaccattggctacttgaattattagtggaagtatatactgtagtataggatcaggatggagtcatggaatctacaa 27422892  T
Q  117 ggagacaagagcatatataagatcacatggtattgtcttagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  27422891 ggagacaagagcatatataagatcacatggtattgtcttagaggcctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttca 27422792  T
Q  217 tacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaatataaaatttggttcatagtagctca 316  Q
    || || |||||||  ||| ||| | ||||||| ||| ||||||||||||| |  ||||||  ||| |||||||||||||||| ||||||||||| |||||    
T  27422791 tatttgattaggatggcagggatcgcaaagttttgttctggtatgcaaattttgtggagtctgtcatgcaaaaatataaaatgtggttcatagtggctca 27422692  T
Q  317 agttcttgtgttcaatatcggttcgcttct 346  Q
     ||||||||||||||||||||||| |||||    
T  27422691 tgttcttgtgttcaatatcggttctcttct 27422662  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 27415176 - 27415032
Alignment:
Q  196 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaatataa 295  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||| || | |||||| || |||||||    
T  27415176 agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttgtaataatataa 27415077  T
Q  296 aatttggttcatagtagctcaagttcttgtgttcaatatcggttc 340  Q
    ||| ||||||||||  || || | |||||||||||| || |||||    
T  27415076 aatgtggttcatagaggcccatgatcttgtgttcaaaattggttc 27415032  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 27425423 - 27425311
Alignment:
Q  193 aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata 292  Q
    |||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| |||||||||    
T  27425423 aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaata 27425324  T
Q  293 taaaatttggttc 305  Q
    |||| | ||||||    
T  27425323 taaattgtggttc 27425311  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 347
Target Start/End: Original strand, 27566449 - 27566634
Alignment:
Q  164 accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca 263  Q
    |||| |||| ||||||| |||||  ||| |||||||||||||||||||| || |||||| |||| |||||| ||||| |||||||||||  |||||||||    
T  27566449 accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca 27566548  T
Q  264 aatatcatggagttggtcttgcaaaa--atataaaatttggttcatagtagctcaagttcttgtgttcaatatcggttcgcttctt 347  Q
    ||| | ||||| || ||| || ||||  ||||||||| ||||| ||||| | |   | |||||||||| |||| ||||| ||||||    
T  27566549 aatttaatggaatttgtcctgaaaaactatataaaatgtggtttatagtggtttgtgatcttgtgttctatattggttctcttctt 27566634  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
Q  196 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg 272  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||| ||||||||||||    
T  27419963 agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg 27419887  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 27566310 - 27566369
Alignment:
Q  8 ccatgaatatatatagataaaagaatattgagaaaccattggctacttgaatgatttgtg 67  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  27566310 ccatgaatatatatagataaaagaatattgaaaaactgttggctacttgaatgatttgtg 27566369  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 27563698 - 27563759
Alignment:
Q  2 ttgcagccatgaatatatatagataaaagaatattgagaaaccattggctacttgaatgatt 63  Q
    ||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  27563698 ttgcaaccatgaatatatatagataaaagaatattgcaaaactattggctacttgaatgatt 27563759  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 27420072 - 27420021
Alignment:
Q  107 gaatctacaaggagacaagagcatatataagatcacatggtattgtcttaga 158  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  27420072 gaatctacaaggaggcaagagcatatataagatcacatggtgttgtcttaga 27420021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 27415411 - 27415245
Alignment:
Q  1 cttgcagccatgaatatatatagataaaagaat----attgagaaaccattggctacttgaatgatttgtggaggtttatactgtagt--------atag 88  Q
    |||| |||| |||||||| |||||| |||||||    ||||||||||  |||||||||||||||||| ||| |||| ||| || ||||        ||||    
T  27415411 cttgtagccttgaatataaatagatgaaagaattcatattgagaaacagttggctacttgaatgattggtgaaggtgtatcctatagtcctatagtatag 27415312  T
Q  89 gatcaggatggagtcatggaatctacaaggagacaagagcatatataagatcacatggtattgtctt 155  Q
    ||| ||| ||| | ||  |||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  27415311 gattaggttggggacaaagaatatacaaagagacaagaggatatataagatcacatggtattgtctt 27415245  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 27566379 - 27566431
Alignment:
Q  107 gaatctacaa-ggagacaagagcatatataagatcacatggtattgtcttaga 158  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  27566379 gaatctacaaaggagacaagagcatatacaagatcacatggaattgtcttaga 27566431  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 27564031 - 27564085
Alignment:
Q  254 ctggtatgcaaatatcatggagttggtcttgcaaaaatataaaatttggttcata 308  Q
    ||||| ||| ||| |||||| ||| |||||||||||||||||||| |||||||||    
T  27564031 ctggtgtgcgaatttcatggggtttgtcttgcaaaaatataaaatgtggttcata 27564085  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 27425588 - 27425540
Alignment:
Q  13 aatatatatagataaaagaatattgagaaaccattggctacttgaatga 61  Q
    ||||||||||||||| ||||||| || ||||  ||||||||||||||||    
T  27425588 aatatatatagataagagaatatggaaaaactgttggctacttgaatga 27425540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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