View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10526_3 (Length: 329)

Name: NF10526_3
Description: NF10526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10526_3
NF10526_3
[»] chr4 (4 HSPs)
chr4 (23-300)||(30774712-30774989)
chr4 (146-264)||(9336358-9336476)
chr4 (147-291)||(35132040-35132184)
chr4 (241-296)||(23597020-23597075)
[»] chr2 (8 HSPs)
chr2 (146-300)||(16662423-16662577)
chr2 (78-267)||(43624927-43625116)
chr2 (149-291)||(7541812-7541954)
chr2 (146-291)||(16657957-16658102)
chr2 (147-291)||(11998992-11999136)
chr2 (155-291)||(12245846-12245982)
chr2 (147-296)||(12259016-12259165)
chr2 (176-285)||(14703021-14703130)
[»] chr7 (20 HSPs)
chr7 (146-285)||(8545216-8545355)
chr7 (147-282)||(6789096-6789231)
chr7 (89-294)||(8586143-8586348)
chr7 (146-291)||(8609500-8609645)
chr7 (89-287)||(8616204-8616405)
chr7 (145-264)||(10494841-10494960)
chr7 (143-252)||(8666999-8667108)
chr7 (178-291)||(27831315-27831428)
chr7 (148-291)||(8575911-8576054)
chr7 (192-291)||(29582281-29582380)
chr7 (146-280)||(29578123-29578257)
chr7 (155-291)||(8646469-8646605)
chr7 (140-264)||(13333835-13333959)
chr7 (146-285)||(3146847-3146986)
chr7 (192-282)||(27846555-27846645)
chr7 (148-285)||(8581285-8581422)
chr7 (167-267)||(8537640-8537740)
chr7 (217-296)||(17259895-17259974)
chr7 (92-234)||(8558912-8559054)
chr7 (217-294)||(17267593-17267670)
[»] chr5 (1 HSPs)
chr5 (146-285)||(28219501-28219640)
[»] chr1 (4 HSPs)
chr1 (146-284)||(4679004-4679142)
chr1 (150-282)||(52549395-52549527)
chr1 (148-282)||(15594619-15594753)
chr1 (167-291)||(34467228-34467352)
[»] chr8 (2 HSPs)
chr8 (146-285)||(43744399-43744538)
chr8 (195-271)||(12528136-12528212)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 30774712 - 30774989
Alignment:
Q  23 tcatcaacattaatatagacactgcaatggttatctccagcagtaccatatccttttgtcatcttcacaggtagagaagtattcctaggaattaccacat 122  Q
    |||| |||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30774712 tcataaacattaatagagacacggcaatggttatcgctagcagtaccatatccttttgtcatcttcacaggtagagaagtattcctaggaattaccacat 30774811  T
Q  123 ccatggtgcctcgattcactgaaataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagc 222  Q
    |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30774812 ccatggtgtcttgattcactgaaataccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagc 30774911  T
Q  223 ctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30774912 ctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacg 30774989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 9336476 - 9336358
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| ||||| ||||| |||||||| |||||||| || || |||||||||| |||||||||||| | |||||| || |||||||| || | |||||    
T  9336476 ataccaagtgacaatggggtaacatctcgtagcaccaagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaa 9336377  T
Q  246 ctgcctcatcaggattgat 264  Q
    | |||||||| || |||||    
T  9336376 cagcctcatctgggttgat 9336358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 291
Target Start/End: Original strand, 35132040 - 35132184
Alignment:
Q  147 taccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaac 246  Q
    ||||||| |||||||| || |||||  | | ||||||||||||  |||| || ||||||| |||||| | ||||||||| || |||||||| | ||| ||    
T  35132040 taccaagagacaaaggtgtaacatcctgtaacaccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctac 35132139  T
Q  247 tgcctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
     |||||||| || || |||||||||||||| |||||||| |||||    
T  35132140 agcctcatcggggttaatgctcttgcacaactccttccctttgaa 35132184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 23597075 - 23597020
Alignment:
Q  241 agcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaat 296  Q
    |||||| ||||||||||| ||||||||||| || |  |||||||||||||||||||    
T  23597075 agcaacagcctcatcagggttgatgctcttacaaagttccttcccattgaagaaat 23597020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 146 - 300
Target Start/End: Complemental strand, 16662577 - 16662423
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| ||||| ||||| || |||||||||||||| |||||  ||| |||||||||||||||||| | |||||| || ||||||||||| | |||||    
T  16662577 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 16662478  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacg 300  Q
    | ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  16662477 cagcctcatcagggttgatgctcttgcacaactccttcccattgaagaagttacg 16662423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 267
Target Start/End: Original strand, 43624927 - 43625116
Alignment:
Q  78 ttgtcatcttcacaggtagagaagtattcctaggaattaccacatccatggtgcctcgattcactgaaataccaagcgacaaaggggtgacatctcgcag 177  Q
    ||||| |||| ||||||| |||||||||||||||||| ||||||  ||||   ||||  ||   | | |||||||| ||||||||||| |||||||||||    
T  43624927 ttgtcttcttgacaggtacagaagtattcctaggaatcaccacactcatgacacctcccttgtttaagataccaagtgacaaaggggtaacatctcgcag 43625026  T
Q  178 caccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgct 267  Q
    |||||| |||||  ||||||||||||||| |||||| | |||||||||||||||||| || | |||||| ||||||||||| || |||||    
T  43625027 caccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatgct 43625116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 7541812 - 7541954
Alignment:
Q  149 ccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactg 248  Q
    ||||| |||||||| || |||||  |||||||||||||||| || ||||||| |||| ||||||| |  |||||||| ||||||||||| | |||||| |    
T  7541812 ccaagagacaaaggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagctgccccataagcaacag 7541911  T
Q  249 cctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||    
T  7541912 cctcatcaggattaatgctcttgcacaagtcctttccattgaa 7541954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 291
Target Start/End: Complemental strand, 16658102 - 16657957
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||||||||| ||||| ||||||| || |||||| | |||| ||||||||| |||||||||||| | |||||| || |||||||| |||| |||||    
T  16658102 ataccaagcgacaatggggtaacatctctcaacaccaaatctgggacattcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaa 16658003  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
    | || ||||| || ||||| || ||||| |||||||| || |||||    
T  16658002 cagcttcatccgggttgatacttttgcataaatccttgcccttgaa 16657957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 291
Target Start/End: Original strand, 11998992 - 11999136
Alignment:
Q  147 taccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaac 246  Q
    ||||||| |||||||| || |||||  ||| |||||| |||||  |||||||||   |||||||||| | |||||| || ||||||||||| | ||| ||    
T  11998992 taccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctac 11999091  T
Q  247 tgcctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
     ||||||||||| || |||||||||||||| |||||||| |||||    
T  11999092 agcctcatcagggttaatgctcttgcacaactccttcccgttgaa 11999136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 291
Target Start/End: Complemental strand, 12245982 - 12245846
Alignment:
Q  155 gacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcat 254  Q
    |||||||| || |||||  ||| |||||| |||||  |||||||||   ||| |||||| | |||||| || ||||||||||| | |||||| ||||| |    
T  12245982 gacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgt 12245883  T
Q  255 caggattgatgctcttgcacaaatccttcccattgaa 291  Q
    |||| || |||||||||||||| |||||||| |||||    
T  12245882 cagggttaatgctcttgcacaattccttcccgttgaa 12245846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 296
Target Start/End: Complemental strand, 12259165 - 12259016
Alignment:
Q  147 taccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaac 246  Q
    ||||||| |||||||| || |||||  ||||| ||||||||||  ||||||  ||  ||||||| || | ||||||||| | ||| |||||   ||| ||    
T  12259165 taccaagagacaaaggtgtaacatcctgcagctccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctac 12259066  T
Q  247 tgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaat 296  Q
     |||||||||||||| |||||||||||||| || ||||| ||||| ||||    
T  12259065 agcctcatcaggattaatgctcttgcacaactctttccccttgaaaaaat 12259016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 14703021 - 14703130
Alignment:
Q  176 agcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcaca 275  Q
    ||||||||||| ||  ||||||| | | |||||||||| | ||||||||| ||||||||||| | ||| || || |||||||| || ||||| |||||||    
T  14703021 agcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagcttcatcagggttaatgctgttgcaca 14703120  T
Q  276 aatccttccc 285  Q
    | ||||||||    
T  14703121 actccttccc 14703130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 8545216 - 8545355
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| ||||||||||| |||||||| |||||||  |||||| |||||||| || |||||||||  | |||||||||||||||||| || | |||||    
T  8545216 ataccaagtgacaaaggggtaacatctcgtagcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaa 8545315  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttccc 285  Q
    | ||||||||||| || ||||||||||| || ||||||||    
T  8545316 cagcctcatcagggttaatgctcttgcataattccttccc 8545355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 6789096 - 6789231
Alignment:
Q  147 taccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaac 246  Q
    ||||||| ||||| || || |||||| |||||||||| |||||  || |||||  |||||| ||||| | |||||||||||||||||| |||| ||||||    
T  6789096 taccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaac 6789195  T
Q  247 tgcctcatcaggattgatgctcttgcacaaatcctt 282  Q
     ||||||||||| ||||||||| |||||||||||||    
T  6789196 agcctcatcagggttgatgctcatgcacaaatcctt 6789231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 294
Target Start/End: Complemental strand, 8586348 - 8586143
Alignment:
Q  89 acaggtagagaagtattcctaggaattaccacatccatggtgcctcgattcactgaaataccaagcgacaaaggggtgacatctcgcagcaccaactttg 188  Q
    ||||||| || ||||||||||||||| |||||| ||||  |  ||| ||   |||| |||||||| |||| |||||| ||||||||||||||||| ||||    
T  8586348 acaggtacagtagtattcctaggaataaccacagccataatatctccatggcctgagataccaagtgacagaggggtaacatctcgcagcaccaagtttg 8586249  T
Q  189 gggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttcccatt 288  Q
    |  | ||||||| | ||| || ||  | || |||||| || || |||||   |||||| |||||||||||||||||| ||||||| ||||| ||||||||    
T  8586248 gaactttcttaaagtctttacacagcaaagaagcctgaactgcagccccactagcaacagcctcatcaggattgatgttcttgcataaatctttcccatt 8586149  T
Q  289 gaagaa 294  Q
    ||||||    
T  8586148 gaagaa 8586143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 291
Target Start/End: Original strand, 8609500 - 8609645
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| |||||||| || ||||||||||||||||| |||||  |    || |||||||||| ||| | ||||||||||||||| || || | |||||    
T  8609500 ataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcacccaacaaagcagcctggacagcagcaccataagcaa 8609599  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
    | ||||||||||| ||||||||| | ||||||||||| ||||||||    
T  8609600 ccgcctcatcagggttgatgctcatacacaaatcctttccattgaa 8609645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 287
Target Start/End: Original strand, 8616204 - 8616405
Alignment:
Q  89 acaggtagagaagtattcctaggaattaccacatccatggtgcctcgattcactgaaataccaagcgacaaaggggtgacatctcgcagcaccaactttg 188  Q
    ||||||| |||||||||||||||||| ||||||  |||  |  |||  || ||| | |||||||| |||| |||||| |||||||||||| |||| ||||    
T  8616204 acaggtacagaagtattcctaggaatcaccacactcataatatctcctttgactaagataccaagtgacagaggggtaacatctcgcagcgccaagtttg 8616303  T
Q  189 gggcattcttaatgccttcact---caatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttccc 285  Q
    |  ||||||||| | ||  | |   ||| | ||||||||| || ||||||||   |||||| |||||||||||||||||| |||||||||||||||||||    
T  8616304 gaacattcttaaagtctgtagtacccaacaaagcagcctgaactgctgccccactagcaacagcctcatcaggattgatgttcttgcacaaatccttccc 8616403  T
Q  286 at 287  Q
    ||    
T  8616404 at 8616405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 10494960 - 10494841
Alignment:
Q  145 aataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagca 244  Q
    ||||||||| ||||| ||||| |||||||| |||||||| || ||| ||||||||| |||||||||||| | ||||||||| |||||||| || | ||||    
T  10494960 aataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagca 10494861  T
Q  245 actgcctcatcaggattgat 264  Q
    || |||||||| || |||||    
T  10494860 acagcctcatctgggttgat 10494841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 8666999 - 8667108
Alignment:
Q  143 gaaataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgag 242  Q
    ||||||||||| ||||||||||| |||||||| |||||||| || ||| ||||||||  |||||||||||| | ||||||||| |||||||| || | ||    
T  8666999 gaaataccaagtgacaaaggggtcacatctcgtagcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataag 8667098  T
Q  243 caactgcctc 252  Q
    |||| |||||    
T  8667099 caacagcctc 8667108  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 27831428 - 27831315
Alignment:
Q  178 caccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaa 277  Q
    |||||| |||||  ||||| ||||| | |||||||| | ||||||||| |||||||| ||   |||||| ||||||||||||||||||||||||||||||    
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa 27831329  T
Q  278 tccttcccattgaa 291  Q
    ||||| || |||||    
T  27831328 tcctttcccttgaa 27831315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 8575911 - 8576054
Alignment:
Q  148 accaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaact 247  Q
    ||||| |||||| || || |||||||| | |||||| |||||  |||||||| ||||||||||||| | |||||| |||||| | || || | ||||||     
T  8575911 accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaaca 8576010  T
Q  248 gcctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
    ||||||||||| ||||||||||| || || |||||||| |||||    
T  8576011 gcctcatcagggttgatgctcttacataattccttccccttgaa 8576054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 291
Target Start/End: Complemental strand, 29582380 - 29582281
Alignment:
Q  192 cattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaa 291  Q
    |||||| |||||||||| |||  | ||||||||| |||||||| || | |||||| ||||||||||| ||||||||| |||||||||||||||| |||||    
T  29582380 cattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaa 29582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 29578257 - 29578123
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||||||||| || || | ||||||||  ||||| |||||  ||||||||||||| ||| |||| | ||||||||| |||||||| || | |||||    
T  29578257 ataccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 29578158  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatcc 280  Q
    | ||||| ||||| || |||||| |||||||||||    
T  29578157 cagcctcgtcagggtttatgctcatgcacaaatcc 29578123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 291
Target Start/End: Original strand, 8646469 - 8646605
Alignment:
Q  155 gacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcat 254  Q
    ||||| |||||||||||| | | |||||| ||||| |||||||||| ||| ||||  |||| ||||||||| || ||||| || | |||||| ||| |||    
T  8646469 gacaatggggtgacatcttgaaacaccaagtttggagcattcttaaagccatcacataataaagcagcctgaacggctgcgccataagcaacggccacat 8646568  T
Q  255 caggattgatgctcttgcacaaatccttcccattgaa 291  Q
    |||| |||||||||| ||| || |||||| |||||||    
T  8646569 cagggttgatgctctcgcataattccttctcattgaa 8646605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 264
Target Start/End: Complemental strand, 13333959 - 13333835
Alignment:
Q  140 actgaaataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgt 239  Q
    |||||||||||||| || || ||| | |||||||| |||||||| || ||| || |||||| |||||||||||| | ||||||||| |||||||| || |    
T  13333959 actgaaataccaagtgataatgggataacatctcgtagcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccat 13333860  T
Q  240 gagcaactgcctcatcaggattgat 264  Q
     |||||| |||||||| || |||||    
T  13333859 aagcaacagcctcatctgggttgat 13333835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 3146847 - 3146986
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| |||||||| |  |||||| ||| |||||| |||||  |||| |||| | |||||||||| | |||||| || |||||||| || | |||||    
T  3146847 ataccaagagacaaaggagcaacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaa 3146946  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttccc 285  Q
    | ||||||||||| |||||||| || |||| || ||||||    
T  3146947 cggcctcatcagggttgatgctgttacacagatgcttccc 3146986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 27846645 - 27846555
Alignment:
Q  192 cattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatcctt 282  Q
    ||||||||||| | |||||||| | ||||||||| |||||||| ||   |||||| ||||||||||| |||||||||||| ||| ||||||    
T  27846645 cattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctcttgtacatatcctt 27846555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 285
Target Start/End: Original strand, 8581285 - 8581422
Alignment:
Q  148 accaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaact 247  Q
    |||||| ||||| || || ||||||||||  | ||| |||||  || |||||||||||||||| |  | ||||||||| | ||| || || | ||||||     
T  8581285 accaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaaca 8581384  T
Q  248 gcctcatcaggattgatgctcttgcacaaatccttccc 285  Q
    ||||||||||| |||||||||||||| || ||||||||    
T  8581385 gcctcatcagggttgatgctcttgcataattccttccc 8581422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 8537640 - 8537740
Alignment:
Q  167 acatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgc 266  Q
    ||||||||||||||||| || ||  || ||||||||||| | ||||| | ||||||||||||||| || || | |||||| || |||||||| |||||||    
T  8537640 acatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgc 8537739  T
Q  267 t 267  Q
    |    
T  8537740 t 8537740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 17259895 - 17259974
Alignment:
Q  217 agcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaat 296  Q
    ||||||||| ||||| || || | |||||| ||||||||||| |||||||||||||| || ||||| || ||||||||||    
T  17259895 agcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaat 17259974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 8558912 - 8559054
Alignment:
Q  92 ggtagagaagtattcctaggaattaccacatccatggtgcctcgattcactgaaataccaagcgacaaaggggtgacatctcgcagcaccaactttgggg 191  Q
    |||| |||||||||||||||||| ||||||  |||  |  |||   |||||  ||||||||| ||||||||||| ||||||| ||||||||  |||||      
T  8558912 ggtacagaagtattcctaggaatcaccacactcataatatctccggtcacttcaataccaagggacaaaggggtaacatctctcagcaccatgtttggaa 8559011  T
Q  192 cattcttaatgccttcactcaatagagcagcctggacagctgc 234  Q
    |||||||| || ||||||| |  | | ||||||||||||||||    
T  8559012 cattcttagtgtcttcactaagcaaaacagcctggacagctgc 8559054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 17267593 - 17267670
Alignment:
Q  217 agcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaa 294  Q
    ||||||||| ||||| || || | |||||| ||||||||||| ||||| || ||||| || |||||||| ||||||||    
T  17267593 agcagcctgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataattccttccccttgaagaa 17267670  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 28219501 - 28219640
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| |||||||| || |||||| ||||||||||||| ||  | || |||| |||||||||||| | ||||||||| |||||||| || | |||||    
T  28219501 ataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaa 28219600  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttccc 285  Q
    | ||||||||||| || |||||||| ||||| ||||||||    
T  28219601 cagcctcatcagggttaatgctcttacacaattccttccc 28219640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 4679142 - 4679004
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| ||||| ||||| |||||||||||||| || || ||| |||||||||  ||||| ||||| | |||||| |||| |||||| || | |||||    
T  4679142 ataccaagtgacaatggggtaacatctcgcagcacaaaattcgggacattcttaaaaccttcgctcaaaatagcagcttggatagctgcaccataagcaa 4679043  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttcc 284  Q
    | |||||||| || ||||| |||||||||||||||||||    
T  4679042 cagcctcatctgggttgatactcttgcacaaatccttcc 4679004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 52549527 - 52549395
Alignment:
Q  150 caagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgc 249  Q
    |||| |||||||| || |||||  ||||||||||||||||  |||||| ||||||||||||||| |  |||||||| |||||||| || | ||| ||  |    
T  52549527 caagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagctacaac 52549428  T
Q  250 ctcatcaggattgatgctcttgcacaaatcctt 282  Q
    |||||||||||| |||| ||||||||| |||||    
T  52549427 ctcatcaggattaatgcccttgcacaactcctt 52549395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 15594619 - 15594753
Alignment:
Q  148 accaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaact 247  Q
    |||||| |||||||| |  |||||| | | |||||| |||||  |||| ||||  ||||||||||| | |||||||||||||||||| || | ||||||     
T  15594619 accaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaaca 15594718  T
Q  248 gcctcatcaggattgatgctcttgcacaaatcctt 282  Q
    ||||||||||| ||||||||| ||||||| |||||    
T  15594719 gcctcatcagggttgatgctcatgcacaattcctt 15594753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 34467352 - 34467228
Alignment:
Q  167 acatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgc 266  Q
    ||||||||||||||||| |||||  |||| |||| ||||| |||||| | |||||| || ||||||||  | | ||| || ||||||||||| |||||||    
T  34467352 acatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcatcagggttgatgc 34467253  T
Q  267 tcttgcacaaatccttcccattgaa 291  Q
    | ||||| | |||||| ||||||||    
T  34467252 tattgcatagatccttaccattgaa 34467228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 43744399 - 43744538
Alignment:
Q  146 ataccaagcgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 245  Q
    |||||||| || ||||| |  |||||| |||||||||  |||||  | || |||| |||||||||||| | ||||||||| |||||||| ||   |||||    
T  43744399 ataccaagagaaaaaggtgcaacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaa 43744498  T
Q  246 ctgcctcatcaggattgatgctcttgcacaaatccttccc 285  Q
    ||||||||||||| || ||| |||| ||||||||||||||    
T  43744499 ctgcctcatcagggttaatgttcttacacaaatccttccc 43744538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 12528136 - 12528212
Alignment:
Q  195 tcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgctcttg 271  Q
    |||| |||||||||||||| | ||||||||| ||||| || || | |||||| ||||||||||| ||||||||||||    
T  12528136 tcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcctcatcagggttgatgctcttg 12528212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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