View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10526_low_2 (Length: 339)

Name: NF10526_low_2
Description: NF10526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10526_low_2
NF10526_low_2
[»] chr6 (8 HSPs)
chr6 (38-196)||(30326636-30326793)
chr6 (41-192)||(342910-343064)
chr6 (39-171)||(24396788-24396920)
chr6 (63-201)||(31597508-31597646)
chr6 (76-192)||(2801275-2801392)
chr6 (54-194)||(2248689-2248830)
chr6 (37-196)||(2817198-2817358)
chr6 (36-102)||(21273752-21273818)
[»] chr3 (19 HSPs)
chr3 (36-195)||(31732066-31732225)
chr3 (37-170)||(43767251-43767384)
chr3 (36-195)||(24487695-24487854)
chr3 (41-196)||(54457440-54457595)
chr3 (69-183)||(42461305-42461419)
chr3 (28-192)||(15496132-15496295)
chr3 (131-188)||(53248662-53248719)
chr3 (79-201)||(23512725-23512846)
chr3 (129-166)||(27473706-27473743)
chr3 (124-192)||(25985419-25985486)
chr3 (68-156)||(34706152-34706240)
chr3 (139-195)||(45076787-45076843)
chr3 (128-179)||(35365248-35365299)
chr3 (121-196)||(50173404-50173478)
chr3 (120-193)||(26554198-26554268)
chr3 (87-201)||(42983884-42983997)
chr3 (154-195)||(38094348-38094389)
chr3 (38-74)||(1402098-1402134)
chr3 (122-190)||(29577269-29577336)
[»] chr8 (23 HSPs)
chr8 (38-194)||(32615798-32615953)
chr8 (37-188)||(42964747-42964896)
chr8 (41-163)||(29912106-29912226)
chr8 (36-201)||(13521693-13521857)
chr8 (38-188)||(41235827-41235971)
chr8 (38-201)||(13611228-13611390)
chr8 (66-171)||(31082296-31082401)
chr8 (66-194)||(13244661-13244788)
chr8 (69-192)||(28626634-28626756)
chr8 (36-148)||(10409678-10409790)
chr8 (36-102)||(20305671-20305737)
chr8 (36-102)||(21092304-21092370)
chr8 (78-168)||(24585828-24585918)
chr8 (120-201)||(39900250-39900329)
chr8 (37-170)||(7859137-7859270)
chr8 (82-156)||(8152973-8153049)
chr8 (120-196)||(34085364-34085438)
chr8 (123-170)||(31331376-31331423)
chr8 (143-201)||(34187012-34187069)
chr8 (125-191)||(44812770-44812835)
chr8 (121-195)||(45312731-45312803)
chr8 (120-189)||(43471367-43471436)
chr8 (120-164)||(6322859-6322903)
[»] chr1 (25 HSPs)
chr1 (63-196)||(27262734-27262867)
chr1 (32-195)||(39526948-39527115)
chr1 (36-173)||(47018980-47019118)
chr1 (36-169)||(44697991-44698124)
chr1 (66-191)||(49805964-49806089)
chr1 (121-196)||(47235523-47235597)
chr1 (66-195)||(52698423-52698551)
chr1 (41-170)||(42479439-42479568)
chr1 (120-195)||(7444959-7445033)
chr1 (74-170)||(9433792-9433888)
chr1 (66-162)||(12806991-12807086)
chr1 (90-193)||(24980816-24980918)
chr1 (90-193)||(24989574-24989676)
chr1 (38-171)||(42592698-42592831)
chr1 (38-100)||(1411643-1411705)
chr1 (120-194)||(50015549-50015623)
chr1 (120-193)||(26478079-26478151)
chr1 (120-193)||(26816552-26816624)
chr1 (31-78)||(8472453-8472499)
chr1 (66-137)||(31963041-31963112)
chr1 (66-97)||(44127648-44127679)
chr1 (97-195)||(34620612-34620709)
chr1 (125-194)||(25580599-25580668)
chr1 (30-62)||(7444856-7444888)
chr1 (139-199)||(32161583-32161642)
[»] chr2 (19 HSPs)
chr2 (47-195)||(11074495-11074642)
chr2 (119-195)||(38788766-38788842)
chr2 (68-195)||(40141941-40142067)
chr2 (37-192)||(1944703-1944856)
chr2 (68-171)||(37426537-37426640)
chr2 (31-189)||(16011796-16011953)
chr2 (121-178)||(31549744-31549801)
chr2 (40-150)||(42088282-42088391)
chr2 (38-95)||(38788707-38788764)
chr2 (67-171)||(3954447-3954551)
chr2 (66-201)||(31663590-31663724)
chr2 (132-193)||(12880141-12880201)
chr2 (46-194)||(44949191-44949338)
chr2 (92-170)||(19204394-19204472)
chr2 (89-171)||(34335031-34335112)
chr2 (158-195)||(7669936-7669973)
chr2 (68-165)||(37744011-37744108)
chr2 (39-107)||(8741056-8741124)
chr2 (125-201)||(33284265-33284341)
[»] chr4 (20 HSPs)
chr4 (68-190)||(5497738-5497860)
chr4 (41-192)||(26009675-26009825)
chr4 (36-192)||(54639678-54639833)
chr4 (47-203)||(3775311-3775466)
chr4 (31-166)||(23568013-23568148)
chr4 (88-201)||(51834740-51834853)
chr4 (120-196)||(21240170-21240245)
chr4 (66-184)||(37626931-37627049)
chr4 (120-194)||(48051718-48051791)
chr4 (65-173)||(11123452-11123560)
chr4 (93-152)||(39292323-39292382)
chr4 (122-196)||(2322583-2322656)
chr4 (120-178)||(22478050-22478108)
chr4 (68-146)||(44131031-44131109)
chr4 (129-197)||(8753000-8753067)
chr4 (38-101)||(29733939-29734002)
chr4 (39-93)||(56128668-56128722)
chr4 (76-166)||(39753937-39754031)
chr4 (36-84)||(6167771-6167819)
chr4 (125-173)||(18915584-18915632)
[»] chr5 (13 HSPs)
chr5 (120-196)||(8611750-8611825)
chr5 (37-201)||(41174290-41174453)
chr5 (121-196)||(41360879-41360954)
chr5 (41-171)||(19608742-19608871)
chr5 (40-190)||(40323822-40323974)
chr5 (61-196)||(9784382-9784512)
chr5 (66-195)||(844740-844868)
chr5 (70-171)||(20975536-20975637)
chr5 (68-166)||(13203147-13203245)
chr5 (65-100)||(22101613-22101648)
chr5 (29-195)||(1863057-1863222)
chr5 (84-152)||(34362499-34362567)
chr5 (132-196)||(42035796-42035859)
[»] chr7 (21 HSPs)
chr7 (66-169)||(3237308-3237411)
chr7 (80-192)||(24423438-24423549)
chr7 (120-192)||(30424887-30424958)
chr7 (79-195)||(34004758-34004873)
chr7 (120-195)||(11662997-11663071)
chr7 (121-195)||(28517785-28517859)
chr7 (75-169)||(39258862-39258955)
chr7 (39-196)||(12837894-12838050)
chr7 (79-192)||(47188422-47188534)
chr7 (122-192)||(22329571-22329640)
chr7 (68-204)||(7711870-7712005)
chr7 (66-165)||(41072400-41072499)
chr7 (69-110)||(6212218-6212259)
chr7 (120-193)||(35116903-35116975)
chr7 (36-195)||(28198005-28198163)
chr7 (41-192)||(6707589-6707738)
chr7 (66-189)||(7399823-7399945)
chr7 (69-110)||(6241144-6241185)
chr7 (125-166)||(36586852-36586893)
chr7 (132-196)||(8903017-8903080)
chr7 (139-179)||(43639022-43639062)
[»] scaffold0074 (1 HSPs)
scaffold0074 (39-130)||(29749-29840)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 30326636 - 30326793
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    |||||||| | ||||||||||| |||| | ||||||| |||||||||||| |||||||||||||| |||| || ||| ||  ||||||||||||||| |     
T  30326636 gggaaatgctgacaagtgcccttaaggcatttgataagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaacatcaaagaa 30326735  T
Q  138 caactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  30326736 caactttttctacatgaaagttatcaattg-ttcccatttttaaatccttaacaagtgt 30326793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 342910 - 343064
Alignment:
Q  41 aaatgttaacaagtgccct---aaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||  ||||||||||| |||||     
T  342910 aaatgttaacaagtgcccttagaagggtacttgataaaaagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaa 343009  T
Q  138 caactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
     |||||||| | ||| |||||||||||||||||| | |||||||||| |||||||    
T  343010 taactttttatgcataaaagttatcaattgtttctattttttgaatctttaacaa 343064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 24396920 - 24396788
Alignment:
Q  39 ggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagc 138  Q
    ||||||||||||||||||||| | || ||||||||||||||| |||||  |||||||||||| |||||  || ||| ||| ||||||||||| ||||| |    
T  24396920 ggaaatgttaacaagtgcccttagggcacttgataaaaagttgaaaatagaaattttatcttagaattcgtgtattcaaaacattgaaacattaaaaaac 24396821  T
Q  139 aactttttctacatgaaagttatcaattgtttc 171  Q
    |||||| | || |||||||||||||||||||||    
T  24396820 aactttatttatatgaaagttatcaattgtttc 24396788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 31597646 - 31597508
Alignment:
Q  63 ggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatc 162  Q
    |||||||||||| |  ||||||||| ||||||| ||||| ||||| |||||| ||  |||| |||||| |||||| |||||||||||||| ||||||||     
T  31597646 ggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaacattaaaaagtaactttttctacataaaagttata 31597547  T
Q  163 aattgtttccaatttttgaatccttaacaagtgttctta 201  Q
    ||||||||  | ||||| |||||||||||||||||||||    
T  31597546 aattgtttttattttttaaatccttaacaagtgttctta 31597508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 2801275 - 2801392
Alignment:
Q  76 aagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttt-tctacatgaaagttatcaattgtttccaa 174  Q
    |||||||||||||||| ||| ||||| |||||||| ||| ||  |||| |||||| |||||| ||||||| ||||||| |||||||||||||||||| |     
T  2801275 aagtttaaaatgaaaactttgtcttgaaatttatgtattcaacacattaaaacattaaaaagtaacttttttctacataaaagttatcaattgtttctat 2801374  T
Q  175 tttttgaatccttaacaa 192  Q
    |||||||||| |||||||    
T  2801375 tttttgaatcattaacaa 2801392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 2248689 - 2248830
Alignment:
Q  54 tgccctaaaggtacttgataaaaagtttaaaatgaaaattttatctt-ggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacat 152  Q
    |||||||| || ||||| ||| ||||| ||| || |||||||||||| ||  ||| || ||| ||  ||||||||||| |||||| ||||||||| ||||    
T  2248689 tgccctaagggcacttgctaagaagttcaaagtggaaattttatcttcggtgtttgtgtattcaacacattgaaacattaaaaagtaactttttcaacat 2248788  T
Q  153 gaaagttatcaattgtttccaatttttgaatccttaacaagt 194  Q
     ||| |||||| ||||||||  ||||||||||||||||||||    
T  2248789 caaacttatcatttgtttcctttttttgaatccttaacaagt 2248830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 2817198 - 2817358
Alignment:
Q  37 agggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaa 136  Q
    ||||||||| |||||| | |||| |  | ||||||||| | |||||||||  ||||||| || |||||||| |  ||| ||  | || ||||||||||||    
T  2817198 agggaaatgctaacaaatacccttatagcacttgataagaggtttaaaatagaaattttttcctggaatttgtttattcaacacgttaaaacatcaaaaa 2817297  T
Q  137 gcaact-ttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    | |||| |||| ||||| ||||||||||| |||||| | ||||| ||||||||||||||||    
T  2817298 gtaactattttttacataaaagttatcaactgtttctattttttaaatccttaacaagtgt 2817358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 21273818 - 21273752
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttgg 102  Q
    |||||||||| |||||||||| | || |||||||| |||||||||||||  || |||||||||||||    
T  21273818 aagggaaatgctaacaagtgctccaagggtacttgttaaaaagtttaaagagataattttatcttgg 21273752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 31732225 - 31732066
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    |||||||||| |||||||||||||   || ||| ||||| |||  ||||||| || ||||||||||| |||| || ||| ||   |||||||||||||||    
T  31732225 aagggaaatgctaacaagtgcccttggggcactagataagaagcctaaaatggaagttttatcttgggatttgtgtattcaacatattgaaacatcaaaa 31732126  T
Q  136 agcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |||||||||||| ||||||||||||| |||| |||||| |||||||||||||||||||||    
T  31732125 agcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaagtg 31732066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 43767251 - 43767384
Alignment:
Q  37 agggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaa 136  Q
    ||||||||||||||||||||||| | || | ||||||| | |||||||||||||||||| ||||| ||||| |||||| ||  |||| ||||||||||||    
T  43767251 agggaaatgttaacaagtgcccttagggcaattgataagaggtttaaaatgaaaattttgtcttgaaatttgtgcattcaacacattaaaacatcaaaaa 43767350  T
Q  137 gcaactttttctacatgaaagttatcaattgttt 170  Q
    | || ||||||||||| ||| |||||||||||||    
T  43767351 gtaattttttctacataaaatttatcaattgttt 43767384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 24487695 - 24487854
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    ||||||||||||||||||| |||| |||| ||||||||| |  ||||||||| ||||||| |||||  || | | || | ||   ||| |||||||||||    
T  24487695 aagggaaatgttaacaagtacccttaaggaacttgataagagttttaaaatggaaattttgtcttgacatatgttcactcaacatattaaaacatcaaaa 24487794  T
Q  136 agcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |  |||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||    
T  24487795 attaactttttctacataaaagttatcaattgtttctattttttgaatcattaacaagtg 24487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 54457440 - 54457595
Alignment:
Q  41 aaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaa 140  Q
    ||||| |||||||||| || |  | |||| |||| ||| ||||||| |||| ||||||||  |||||||| ||| ||  |||||||| ||||||||||||    
T  54457440 aaatgctaacaagtgctcttagagcacttaataagaagattaaaataaaaaatttatcttaaaatttatgtattcaacacattgaaatatcaaaaagcaa 54457539  T
Q  141 ctttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    || ||||||||  |||||||||| |||||| || || |||||||||||||| ||||    
T  54457540 ctctttctacaacaaagttatcagttgttttcatttattgaatccttaacacgtgt 54457595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 42461419 - 42461305
Alignment:
Q  69 tgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgt 168  Q
    |||||||||||||||| |||||| ||||||||   |||| |  ||| ||  |||||||||||  ||||| || ||||| ||||| |||||||||||||||    
T  42461419 tgataaaaagtttaaagtgaaaaatttatcttaagatttgtatattcaacacattgaaacatataaaagtaattttttttacataaaagttatcaattgt 42461320  T
Q  169 ttccaatttttgaat 183  Q
    |||||||||||||||    
T  42461319 ttccaatttttgaat 42461305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 15496295 - 15496132
Alignment:
Q  28 cttaaaagaagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaa 127  Q
    ||||||| |||| ||||||||||||||||||| | ||  |||||||| || |||||| |   || |||||||||| |||| || ||| ||   ||||||     
T  15496295 cttaaaataaggaaaatgttaacaagtgcccttatggcccttgataagaaatttaaagtaggaactttatcttgggatttgtgtattcaacatattgaat 15496196  T
Q  128 catcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
     |||||||||||||||||   |||||||||||||||||| |||   ||||| |||||||||||||    
T  15496195 tatcaaaaagcaacttttaacacatgaaagttatcaattattt-atattttggaatccttaacaa 15496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 53248662 - 53248719
Alignment:
Q  131 caaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatcctta 188  Q
    ||||||| |||||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  53248662 caaaaagtaactttttatacataaaagttatcaattgtttctattttttgaatcctta 53248719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 23512846 - 23512725
Alignment:
Q  79 tttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttt 178  Q
    |||||| | ||||||||||||||| | || |||||| ||  |||||||||| ||||||| ||| |||||| ||| ||| || |||||| ||| | |||||    
T  23512846 tttaaagtaaaaattttatcttgggaattgtgcattcaagacattgaaacaacaaaaagtaacattttctccataaaatttgtcaattattt-ctatttt 23512748  T
Q  179 tgaatccttaacaagtgttctta 201  Q
     ||||| |||||||||| |||||    
T  23512747 ggaatctttaacaagtgctctta 23512725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 27473743 - 27473706
Alignment:
Q  129 atcaaaaagcaactttttctacatgaaagttatcaatt 166  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  27473743 atcaaaaagcaactttttctaaatgaaagttatcaatt 27473706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 25985419 - 25985486
Alignment:
Q  124 gaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    ||||||| ||||| |||||||||||| || ||||||||||||| ||| | |||||| ||||||||||||    
T  25985419 gaaacattaaaaaacaactttttctatataaaagttatcaattattt-ctatttttaaatccttaacaa 25985486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 34706152 - 34706240
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaa 156  Q
    ||||||||||| ||||||| | ||||||||||| ||| || |||||| || | ||||||| |  ||||| ||||||||| |||||||||    
T  34706152 ttgataaaaagcttaaaataacaattttatctttgaaattgtgcatttaacttattgaaagaataaaaatcaactttttttacatgaaa 34706240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 45076787 - 45076843
Alignment:
Q  139 aactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    ||||||||||||||||||||| |||| ||||| || ||| | |||||||||||||||    
T  45076787 aactttttctacatgaaagttttcaaatgttttcattttctaaatccttaacaagtg 45076843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 35365248 - 35365299
Alignment:
Q  128 catcaaaaagcaactttttctacatgaaagttatcaattgtttccaattttt 179  Q
    ||||||||| |||| |||| || ||||||||||||||||||||||| |||||    
T  35365248 catcaaaaaacaacgttttttaaatgaaagttatcaattgtttccatttttt 35365299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 50173404 - 50173478
Alignment:
Q  121 attgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||| | |||||||||||| |||| |||| ||| ||| |||||||||||  |||||||||||||||| |||||    
T  50173404 attgaaataccaaaaagcaactctttcaacataaaatttagcaattgtttcc-ttttttgaatccttaactagtgt 50173478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 26554268 - 26554198
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaag 193  Q
    ||||||||||||||||| |||||||||||||||| |||  ||||||  ||||| |||||| |||| ||||||||    
T  26554268 cattgaaacatcaaaaaacaactttttctacatgtaag--atcaataatttcc-atttttaaatcattaacaag 26554198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 42983884 - 42983997
Alignment:
Q  87 gaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatcct 186  Q
    ||||||||||| ||| || | ||||||| ||  ||||||||  | |||||| ||||||  |||||| ||| |||| |||  |||||| |||||||||| |    
T  42983884 gaaaattttattttgaaaataatgcatttaacacattgaaaatttaaaaagtaactttgactacataaaatttataaatcatttcca-tttttgaatcat 42983982  T
Q  187 taacaagtgttctta 201  Q
    |||||||||||||||    
T  42983983 taacaagtgttctta 42983997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 38094348 - 38094389
Alignment:
Q  154 aaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |||||||||||||||||| | ||||||||||||||| |||||    
T  38094348 aaagttatcaattgtttctattttttgaatccttaataagtg 38094389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 1402134 - 1402098
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataa 74  Q
    |||||||||||||||||||||| |||| |||||||||    
T  1402134 gggaaatgttaacaagtgccctcaaggcacttgataa 1402098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 29577336 - 29577269
Alignment:
Q  122 ttgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaac 190  Q
    |||||| ||||||||| || ||||||||||| ||| ||| |||||||||||  ||||| ||||||||||    
T  29577336 ttgaaatatcaaaaagtaattttttctacataaaatttagcaattgtttcc-ttttttaaatccttaac 29577269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 32615798 - 32615953
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    |||||||||||||||||||||| | || ||||||||| ||||||||| |  ||||||||||||||||||  || ||| ||  ||||||||||| |||||     
T  32615798 gggaaatgttaacaagtgcccttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaa 32615897  T
Q  138 caactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagt 194  Q
    ||||||| | ||||||||||||||||||||||| | ||||||| ||| |||||||||    
T  32615898 caactttatttacatgaaagttatcaattgttt-ctatttttggatctttaacaagt 32615953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 42964747 - 42964896
Alignment:
Q  37 agggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaa 136  Q
    ||||||||| |||||||| |||  | || ||||||||| ||||||||| || |||||||||||||| |||  || ||| ||  |||||||||||||||||    
T  42964747 agggaaatgctaacaagttcccctagggcacttgataagaagtttaaagtggaaattttatcttgggattg-tgtattcaacacattgaaacatcaaaaa 42964845  T
Q  137 gcaactttttctacatgaaagttatcaattgtttccaatttttgaatcctta 188  Q
      |||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  42964846 ataactttttctacatgaaagttatcaattatttcc-atttttgagtcctta 42964896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 29912106 - 29912226
Alignment:
Q  41 aaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaa 140  Q
    |||||||||||||||||||   || ||||||||| ||||||||| |  ||||||||||||  ||||| || ||| || ||||||||||||||||||||||    
T  29912106 aaatgttaacaagtgccctg--ggcacttgataagaagtttaaagtagaaattttatcttaaaatttgtgtattcaactcattgaaacatcaaaaagcaa 29912203  T
Q  141 ctttttctacatgaaagttatca 163  Q
    |||| |||||||| |||||||||    
T  29912204 ctttatctacatggaagttatca 29912226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 13521857 - 13521693
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    ||||||||||||||||||||| || | || || |||||| ||||||||| |  ||||||||| ||| ||||| || |||  |  ||||||||||| ||||    
T  13521857 aagggaaatgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtattctacacattgaaacattaaaa 13521758  T
Q  136 agcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttctta 201  Q
    |  || ||| | ||||||||||||||||||| ||| | ||||||| |||||||||||||| |||||    
T  13521757 aataattttatttacatgaaagttatcaattattt-ctatttttgtatccttaacaagtgatctta 13521693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 41235971 - 41235827
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    |||||||| ||||||||| | | | || ||||||||||||||||||| |  |||||||| ||||| |||| || ||| ||  ||    |||||||||||     
T  41235971 gggaaatgctaacaagtgtcattagggcacttgataaaaagtttaaagtagaaatttta-cttgggatttgtgtattcaacaca----aacatcaaaaaa 41235877  T
Q  138 caactttttctacatgaaagttatcaattgtttccaatttttgaatcctta 188  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  41235876 caactttttctacatgaaatttatcaattgtttcc-atttttgaatcctta 41235827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 13611390 - 13611228
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    ||||||||||||||||||| || | || || |||||| ||||||||| |  ||||||||| ||| ||||| || |||  |  ||||||||||| |||||     
T  13611390 gggaaatgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtattctacacattgaaacattaaaaaa 13611291  T
Q  138 caactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttctta 201  Q
     || ||| | ||||||||||||||||||| ||| | ||||||| |||||||||||||| |||||    
T  13611290 taattttatttacatgaaagttatcaattattt-ctatttttgtatccttaacaagtgatctta 13611228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 31082296 - 31082401
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||||||| |||||||||||||||||||||||||| | || | | ||  ||||  |  |||||||||||| ||||||||||| ||||| ||| ||    
T  31082296 acttgataaaaagcttaaaatgaaaattttatcttggaatctttgtaatcaacacattttataatcaaaaagcaattttttctacataaaagtgatctat 31082395  T
Q  166 tgtttc 171  Q
    ||||||    
T  31082396 tgtttc 31082401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 13244661 - 13244788
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||| || ||| ||||  ||||||||| || |||||| || ||| ||   ||||||| |||||||| ||| ||| ||||||| ||||||||||||    
T  13244661 acttgataagaaattttaaatagaaattttattttagaatttgtgtattcaatatattgaaatatcaaaaaacaattttgtctacataaaagttatcaat 13244760  T
Q  166 tgtttccaatttttgaatccttaacaagt 194  Q
    ||||| | ||||||||||| |||||||||    
T  13244761 tgttt-ctatttttgaatcattaacaagt 13244788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 28626756 - 28626634
Alignment:
Q  69 tgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgt 168  Q
    |||||| ||||||||| | |||| ||||||||| ||||||||  || ||  ||||||||||||||||| ||||||| | ||||||||| ||| ||||| |    
T  28626756 tgataagaagtttaaagtaaaaaatttatcttgaaatttatgtcttcaatacattgaaacatcaaaaaacaactttatttacatgaaacttaacaattat 28626657  T
Q  169 ttccaatttttgaatccttaacaa 192  Q
    || | ||||||| ||| |||||||    
T  28626656 tt-ctatttttggatctttaacaa 28626634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 10409790 - 10409678
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    |||| |||| |||||||||||||| |||  ||||||||| | |||||||||  ||| ||||||||| || || || ||| ||  |||| |||||||||||    
T  10409790 aaggaaaatattaacaagtgcccttaagacacttgataagaggtttaaaatagaaactttatcttgaaacttgtgtatttaacacattaaaacatcaaaa 10409691  T
Q  136 agcaactttttct 148  Q
    || ||||||||||    
T  10409690 agtaactttttct 10409678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 20305671 - 20305737
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttgg 102  Q
    |||||||||| ||||||||||| ||| || ||||||||| |||||||||| | || |||||||||||    
T  20305671 aagggaaatgctaacaagtgccttaacggcacttgataagaagtttaaaaaggaagttttatcttgg 20305737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 21092304 - 21092370
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttgg 102  Q
    |||||||||| ||||||||||| ||| || ||||||||| |||||||||| | || |||||||||||    
T  21092304 aagggaaatgctaacaagtgccttaacggcacttgataagaagtttaaaaaggaagttttatcttgg 21092370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 24585828 - 24585918
Alignment:
Q  78 gtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgt 168  Q
    |||||||||  ||||||||||||| ||||| |  ||| ||  |||| ||||||||||||||||  || | |||||||||||||||||||||    
T  24585828 gtttaaaatagaaattttatcttgaaatttgtttattcaacacattaaaacatcaaaaagcaatcttatatacatgaaagttatcaattgt 24585918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 39900329 - 39900250
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttctta 201  Q
    |||| ||||||||||||| || |||||  |||| ||||||||||||| |||| | |||||||||||||||||| ||| ||||    
T  39900329 cattaaaacatcaaaaagtaatttttt--acataaaagttatcaattatttctattttttgaatccttaacaaatgtactta 39900250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 7859270 - 7859137
Alignment:
Q  37 agggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaa 136  Q
    ||||||||  ||||||||||||| | |   |||||||||||||||||| ||  |||||||||||  || || || ||| ||  |||| |||||| |||||    
T  7859270 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacattaaaaa 7859171  T
Q  137 gcaactttttctacatgaaagttatcaattgttt 170  Q
    | ||||||||| |||| |||  ||||||||||||    
T  7859170 gtaactttttcaacataaaatatatcaattgttt 7859137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 8152973 - 8153049
Alignment:
Q  82 aaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaacttttt--ctacatgaaa 156  Q
    |||||| |||||||||||||||||||||| ||| ||   |||||||| ||||||| |||||||||  ||||||||||    
T  8152973 aaaatggaaattttatcttggaatttatgtattcaatatattgaaacttcaaaaaacaacttttttcctacatgaaa 8153049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 34085364 - 34085438
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||| |||||||||| ||||| | || ||||||||||||||||| |||| | |||||| |||||||||||||||    
T  34085364 cattgaatcatcaaaaagtaacttat-ctccatgaaagttatcaattatttcta-tttttggatccttaacaagtgt 34085438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 31331423 - 31331376
Alignment:
Q  123 tgaaacatcaaaaagcaactttttctacatgaaagttatcaattgttt 170  Q
    |||||||| ||||||||||||||| || |||||| |||||||||||||    
T  31331423 tgaaacataaaaaagcaactttttatatatgaaaattatcaattgttt 31331376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 34187012 - 34187069
Alignment:
Q  143 ttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttctta 201  Q
    |||| ||||||||| ||||||||||||||| |||||| |||| ||||||||||| ||||    
T  34187012 ttttttacatgaaaattatcaattgtttcc-atttttaaatctttaacaagtgtcctta 34187069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 44812835 - 44812770
Alignment:
Q  125 aaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaaca 191  Q
    |||||||||||| ||||||||| ||||| ||||||| ||| ||||| | |||||||||||| |||||    
T  44812835 aaacatcaaaaaacaactttttatacataaaagttaacaactgttttc-atttttgaatccataaca 44812770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 45312803 - 45312731
Alignment:
Q  121 attgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    ||||||| || |||||||||| ||||| |||||||| ||| ||||| |||| | |||||||||||||||||||||    
T  45312803 attgaaagattaaaaagcaacgttttc-acatgaaatttaacaattatttc-attttttgaatccttaacaagtg 45312731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 43471367 - 43471436
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaa 189  Q
    |||| |||||||||||| ||| ||||| ||||| ||| ||||||||| ||| || |||||||||| ||||    
T  43471367 cattaaaacatcaaaaaacaattttttatacataaaaattatcaattatttacattttttgaatctttaa 43471436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 6322903 - 6322859
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaa 164  Q
    ||||| ||||||||||| ||| |||||||||||||||| ||||||    
T  6322903 cattggaacatcaaaaaacaattttttctacatgaaagctatcaa 6322859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 27262867 - 27262734
Alignment:
Q  63 ggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatc 162  Q
    |||||| ||||| |||||||||||| ||||||| |||| |||||| || ||| ||  |||| |||||| |||||| || ||||||||||| |||||||||    
T  27262867 ggtactcgataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatc 27262768  T
Q  163 aattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||||| | ||||||||||||||||||||||    
T  27262767 aattgtttctattttttgaatccttaacaagtgt 27262734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 39526948 - 39527115
Alignment:
Q  32 aaagaagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaa-----atgaaaattttatcttggaatttatgcattaaaatcattgaa 126  Q
    |||||||||||||| |||||||||||| || |  ||||| |||||||||||||     ||||||  |||||||||||| || |||||| ||  |||||||    
T  39526948 aaagaagggaaatgctaacaagtgccccaatgacacttgttaaaaagtttaaagtggaatgaaatctttatcttggaaattgtgcattcaacccattgaa 39527047  T
Q  127 acatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    ||| ||||||| |||||||||||||| ||| ||||| ||| ||||||| ||||||||||||||||||||    
T  39527048 acaacaaaaaggaactttttctacataaaatttatcgattatttccaa-ttttgaatccttaacaagtg 39527115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 47019118 - 47018980
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    |||| ||||| |||||||||  || |||| ||||||||| ||||||||| || || |||| ||||||||||| |||||| ||  |||||||| |||||||    
T  47019118 aaggaaaatgctaacaagtgatcttaaggcacttgataagaagtttaaagtggaagttttttcttggaatttttgcattcaatacattgaaatatcaaaa 47019019  T
Q  136 agcaa-ctttttctacatgaaagttatcaattgtttcca 173  Q
    |||||  ||||||||||||||||||||||| | ||||||    
T  47019018 agcaatttttttctacatgaaagttatcaaatttttcca 47018980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 44697991 - 44698124
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    |||||||||  ||||||||||||| | || ||||||||| ||||||||| || || ||||||||||||| || || ||| ||   |||||||||| ||||    
T  44697991 aagggaaatactaacaagtgcccttagggcacttgataataagtttaaagtggaagttttatcttggaagttgtgtattcaacatattgaaacattaaaa 44698090  T
Q  136 agcaactttttctacatgaaagttatcaattgtt 169  Q
    || ||||||||| |||| ||| ||||||||||||    
T  44698091 agtaactttttcaacataaaatttatcaattgtt 44698124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 49806089 - 49805964
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||| | ||||||||| |||||||| ||||| ||||| |||||| ||  |||| ||| || |||||| |||||||||||||| |||||||| |||    
T  49806089 acttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagtaactttttctacataaaagttataaat 49805990  T
Q  166 tgtttccaatttttgaatccttaaca 191  Q
    |||||| | ||||| |||| ||||||    
T  49805989 tgtttctattttttaaatctttaaca 49805964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 47235523 - 47235597
Alignment:
Q  121 attgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  47235523 attgaaacattaaaaagcaactttatttacatgaaagttatcaattgttt-ctatttttgaattcttaacaagtgt 47235597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 52698423 - 52698551
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||| |||| |||| |  ||||||| |||||| | || || ||| ||  |||||||| | |||||| ||||||||||| ||| ||||||||||||    
T  52698423 acttgataagaagtctaaagtagaaattttttcttgggaattgtgtattcaacacattgaaataacaaaaaacaactttttctccataaaagttatcaat 52698522  T
Q  166 tgtttccaatttttgaatccttaacaagtg 195  Q
    ||||||| |||||| |||||||||||||||    
T  52698523 tgtttcc-attttttaatccttaacaagtg 52698551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 42479439 - 42479568
Alignment:
Q  41 aaatgttaacaagtgccctaaa--ggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagc 138  Q
    ||||| |||||||||||||| |  |||||||||||| ||| |||||||||||||||||||||||  ||| |  ||| || ||||| |||||| |||||      
T  42479439 aaatgctaacaagtgccctataagggtacttgataagaaggttaaaatgaaaattttatcttgg-gtttgtatattcaactcattaaaacataaaaaaat 42479537  T
Q  139 aactttttctacatgaaagttatcaattgttt 170  Q
    |||||||| ||||||||| |||||||||||||    
T  42479538 aacttttt-tacatgaaaattatcaattgttt 42479568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 7444959 - 7445033
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| ||| | ||||| ||||| ||||||||||    
T  7444959 cattgaaatatcaaaaagcaactttttatacatgaaagttatcaattattt-ctattttagaatctttaacaagtg 7445033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 9433792 - 9433888
Alignment:
Q  74 aaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgttt 170  Q
    ||||||| ||| |||| ||||| |||| | |||| || ||| ||  ||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  9433792 aaaagttcaaagtgaacattttgtcttcggatttgtgtattcaacacattgaaacatcaaagagcaactttttctatatgcaagttatcaattgttt 9433888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 12807086 - 12806991
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatc 162  Q
    ||||||||| |||||||||||||||| ||||||||||||||| |  ||| ||  ||||||  ||||||||| ||| ||||||||||| |||||||||    
T  12807086 acttgataagaagtttaaaatgaaaa-tttatcttggaatttttatattcaatacattgattcatcaaaaaacaattttttctacataaaagttatc 12806991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 24980918 - 24980816
Alignment:
Q  90 aattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaa 189  Q
    ||||||||||| |||||| || ||| ||  |||||||||| |||||||||||||  ||||||| ||| |||||||||||||   ||||||| ||||||||    
T  24980918 aattttatcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgttt-atatttttggatccttaa 24980820  T
Q  190 caag 193  Q
    ||||    
T  24980819 caag 24980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 24989676 - 24989574
Alignment:
Q  90 aattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaa 189  Q
    ||||||||||| |||||| || ||| ||  |||||||||| |||||||||||||  ||||||| ||| |||||||||||||   ||||||| ||||||||    
T  24989676 aattttatcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgttt-atatttttggatccttaa 24989578  T
Q  190 caag 193  Q
    ||||    
T  24989577 caag 24989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 42592831 - 42592698
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    |||||||| ||||||||| || || |||| ||||||| ||||||||| || ||  |||||||||||| || || ||| ||  ||||||||| | ||||||    
T  42592831 gggaaatgctaacaagtgtcccaagggtatttgataagaagtttaaagtggaaggtttatcttggaagttgtgtattcaacccattgaaacgttaaaaag 42592732  T
Q  138 caactttttctacatgaaagttatcaattgtttc 171  Q
     || |||||| |||| ||| ||||||||| ||||    
T  42592731 taattttttcaacataaaatttatcaattatttc 42592698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 1411643 - 1411705
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatctt 100  Q
    ||||||||||||||||||||||  || |||||| ||| |||||||||| | ||||||||||||    
T  1411643 gggaaatgttaacaagtgcccttgagatacttgttaagaagtttaaaaaggaaattttatctt 1411705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 50015623 - 50015549
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagt 194  Q
    |||| ||| ||||||||| |||||||| ||||  ||| |||||||||||||| | ||||||||| ||||||||||    
T  50015623 cattcaaaaatcaaaaagtaactttttatacaaaaaatttatcaattgtttctattttttgaattcttaacaagt 50015549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 26478079 - 26478151
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaag 193  Q
    |||| ||||||||||||  |||||||||||||| ||| |||||||||| |||| |||||| ||| |||||||||    
T  26478079 cattaaaacatcaaaaaataactttttctacataaaaattatcaattg-ttcctattttttaattcttaacaag 26478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 26816624 - 26816552
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaag 193  Q
    ||||||||||||| ||||||| ||   |||||||||||||||||||||||| | || ||||||| |||||||||    
T  26816624 cattgaaacatcacaaagcaatttaaactacatgaaagttatcaattgttt-ctatgtttgaattcttaacaag 26816552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 8472499 - 8472453
Alignment:
Q  31 aaaagaagggaaatgttaacaagtgccctaaaggtacttgataaaaag 78  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  8472499 aaaataagggaaatgttaacaagtgccctcaaggtactt-ataaaaag 8472453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 31963112 - 31963041
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaag 137  Q
    ||||||||| |||||||||||| ||||||| | ||||||||| || ||| ||  ||||||||||| ||||||    
T  31963112 acttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaag 31963041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 97
Target Start/End: Original strand, 44127648 - 44127679
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttat 97  Q
    ||||||||||||||||||||||||||||||||    
T  44127648 acttgataaaaagtttaaaatgaaaattttat 44127679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 34620709 - 34620612
Alignment:
Q  97 tcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |||||| ||| ||||||| ||  ||||||||| | |||||| || ||||||||||| ||| ||| ||||| ||| | ||||| ||||||||||||||||    
T  34620709 tcttgggattgatgcattcaacacattgaaacttgaaaaagtaattttttctacataaaacttaccaattattt-ctattttagaatccttaacaagtg 34620612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 25580668 - 25580599
Alignment:
Q  125 aaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagt 194  Q
    ||||||||||||| |  |||||||||||   | ||||||||| |||||| |||||||||| |||||||||    
T  25580668 aaacatcaaaaagtagatttttctacatactaattatcaattatttccattttttgaatctttaacaagt 25580599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 7444856 - 7444888
Alignment:
Q  30 taaaagaagggaaatgttaacaagtgccctaaa 62  Q
    |||||||||| ||||||||||||||||||||||    
T  7444856 taaaagaaggaaaatgttaacaagtgccctaaa 7444888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 32161583 - 32161642
Alignment:
Q  139 aactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttct 199  Q
    |||||||||||||| ||| ||||||||| ||| | ||||||||||| ||||||||| ||||    
T  32161583 aactttttctacataaaatttatcaattattt-ctatttttgaatcattaacaagttttct 32161642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 11074642 - 11074495
Alignment:
Q  47 taacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaacttttt 146  Q
    ||||||||||||| |  | ||||||||| ||||||||| |  ||||||| |||||| |||| || ||| ||  ||||||||||| |||||||||||||||    
T  11074642 taacaagtgcccttagagcacttgataagaagtttaaagtagaaattttttcttgggatttgtgtattcaacacattgaaacataaaaaagcaacttttt 11074543  T
Q  147 ctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    || |||| |||||||| ||||||||| ||||||||||||||||||||||    
T  11074542 ctgcatggaagttatctattgtttcc-atttttgaatccttaacaagtg 11074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 38788766 - 38788842
Alignment:
Q  119 tcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  38788766 tcattaaaacatcaaaaagtaactttttctacatgaaagttgtcaattgtttctattttttgaatccttaacaagtg 38788842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 40142067 - 40141941
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattg 167  Q
    ||||||| ||||||||| | |||| ||||||||  ||||| |  ||| || ||||||||||| |||||||||||||| |||||||||||||||| | |||    
T  40142067 ttgataagaagtttaaagtaaaaaatttatcttaaaatttgtatattcaactcattgaaacaccaaaaagcaactttatctacatgaaagttataatttg 40141968  T
Q  168 tttccaatttttgaatccttaacaagtg 195  Q
    ||| | ||||||  ||||||||||||||    
T  40141967 ttt-ctatttttttatccttaacaagtg 40141941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 1944703 - 1944856
Alignment:
Q  37 agggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaa 136  Q
    ||||||||||||||| |||   ||| |  ||||||||||| |||||||||||||||||  ||||||||||| || ||| ||  ||||||||||| |||||    
T  1944703 agggaaatgttaacaggtgttgtaaggacacttgataaaa-gtttaaaatgaaaatttg-tcttggaatttgtgtattcaatacattgaaacattaaaaa 1944800  T
Q  137 gcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    | || |||||||  || |||||||||||||||||  | |||| ||||| |||||||    
T  1944801 gtaattttttctgtataaaagttatcaattgtttatatttttggaatctttaacaa 1944856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 37426640 - 37426537
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattg 167  Q
    ||||||| |||||||||||  ||||||||  |||| |||| || ||| ||  |||||||| |||||||||||| ||||||||||||||||||||  ||||    
T  37426640 ttgataagaagtttaaaatagaaattttactttgggatttgtgtattcaacacattgaaatatcaaaaagcaattttttctacatgaaagttatggattg 37426541  T
Q  168 tttc 171  Q
    ||||    
T  37426540 tttc 37426537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 16011953 - 16011796
Alignment:
Q  31 aaaagaagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacat 130  Q
    ||||||| ||||||| ||||||||||||| |  | |  || ||| ||||||||| |  || ||||||||||||||||||| ||||||  |||| ||| ||    
T  16011953 aaaagaaaggaaatgctaacaagtgcccttagagcatctgttaataagtttaaagtagaagttttatcttggaatttatgtattaaacacattaaaaaat 16011854  T
Q  131 caaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaa 189  Q
    ||||||  || ||||| ||||| ||||||||||||| |||   ||||||||||||||||    
T  16011853 caaaaaataattttttttacataaaagttatcaattattt-atatttttgaatccttaa 16011796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 31549801 - 31549744
Alignment:
Q  121 attgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttt 178  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||    
T  31549801 attgaaacatcaaaaagcaactttttttacattaaagttatcaagtgtttccattttt 31549744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 42088391 - 42088282
Alignment:
Q  40 gaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagca 139  Q
    |||||||||| ||||| |||||  | | ||||||| |||| ||||||||||||||||| ||| ||  |||||| ||| | |||||||||| ||||||| |    
T  42088391 gaaatgttaagaagtgtcctaagtgcatttgataagaagtataaaatgaaaattttattttgaaaactatgcactaaca-cattgaaacaacaaaaagta 42088293  T
Q  140 actttttctac 150  Q
    |||||||||||    
T  42088292 actttttctac 42088282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 38788707 - 38788764
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaatttt 95  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| | |||||||    
T  38788707 gggaaatgttaacaagtgcccttaaggcacttgataaaaggtttaaaacggaaatttt 38788764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 3954551 - 3954447
Alignment:
Q  67 cttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaatt 166  Q
    ||||||||||| ||||||||  |||||||||||| | |||| || ||| || ||||||||| || |||||| || |||||  ||||||||||||| ||||    
T  3954551 cttgataaaaaatttaaaatagaaattttatcttaggatttgtgaattcaactcattgaaatattaaaaagtaattttttacacatgaaagttattaatt 3954452  T
Q  167 gtttc 171  Q
     ||||    
T  3954451 atttc 3954447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 31663724 - 31663590
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    |||| ||||||||||||||||  ||||||| || |  ||||| | |||| ||   || |||||||||||||   |||||||||| || ||| ||||||||    
T  31663724 acttaataaaaagtttaaaatagaaattttttcataaaatttgtacattcaacatatcgaaacatcaaaaaattactttttctatataaaatttatcaat 31663625  T
Q  166 tgtttccaatttttgaatccttaacaagtgttctta 201  Q
    ||||| | |||| |||||||||||||||||| ||||    
T  31663624 tgttttc-atttgtgaatccttaacaagtgtcctta 31663590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 12880141 - 12880201
Alignment:
Q  132 aaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaag 193  Q
    |||||| || ||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  12880141 aaaaagtaattttttctacataaaacttatcaattatttcc-atttttgaatccttaacaag 12880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 44949191 - 44949338
Alignment:
Q  46 ttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttt 145  Q
    |||||||||||||| | |  ||||| ||||||| | |||||  ||||||||||||| || || || ||| || | ||||||| || ||||| |||| |||    
T  44949191 ttaacaagtgccctcatgacacttgttaaaaagctcaaaatataaattttatcttgaaaattgtgtattcaacttattgaaagattaaaaaacaacattt 44949290  T
Q  146 tctacatgaaagttatcaattgtttccaatttttgaatccttaacaagt 194  Q
    ||||| | ||| ||| ||||||||| | |||||| ||| ||||||||||    
T  44949291 tctacgtaaaatttaacaattgttttc-atttttaaattcttaacaagt 44949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 19204394 - 19204472
Alignment:
Q  92 ttttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgttt 170  Q
    ||||||||||  ||||||| ||| ||  ||||||||||| |||||  ||||||||| |||| ||| |||||||||||||    
T  19204394 ttttatcttgagatttatgtattcaacacattgaaacataaaaaaataactttttcaacataaaaattatcaattgttt 19204472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 34335031 - 34335112
Alignment:
Q  89 aaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttc 171  Q
    ||||||||||||  |||||||  ||| ||| |||||||||||||||||| || ||| |||||| |||| |||| |||||||||    
T  34335031 aaattttatcttaaaatttatatattcaaa-cattgaaacatcaaaaagtaattttatctacacgaaaattattaattgtttc 34335112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 7669936 - 7669973
Alignment:
Q  158 ttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |||||||||||||| | |||||||||||||||||||||    
T  7669936 ttatcaattgtttcaattttttgaatccttaacaagtg 7669973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 37744011 - 37744108
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||| ||||||||||| |||||||||||||  |||||||| ||| ||   ||| ||||||||||| | || ||| | ||||| ||| ||||||||    
T  37744011 ttgataagaagtttaaaataaaaattttatcttaaaatttatgtattcaatatattaaaacatcaaaaggtaattttgtttacataaaaattatcaat 37744108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 8741124 - 8741056
Alignment:
Q  39 ggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaattt 107  Q
    ||||| ||||||||||||| | | |  |||| |||| |||||||||||  |||||||||||||||||||    
T  8741124 ggaaacgttaacaagtgcctttacgacactttataacaagtttaaaatagaaattttatcttggaattt 8741056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 33284341 - 33284265
Alignment:
Q  125 aaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttctta 201  Q
    ||||||||||||  || |||||||| |||||| |||||| || |||   |||||||||| ||||| |||||||||||    
T  33284341 aaacatcaaaaaataattttttctatatgaaaattatcatttttttttcatttttgaatacttaataagtgttctta 33284265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 5497738 - 5497860
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattg 167  Q
    ||||||| || ||||||||| ||||||||||||  |||||||| ||| ||  || ||||||||||||||| |||||||||||||| ||||||||||| ||    
T  5497738 ttgataacaaatttaaaatggaaattttatcttaaaatttatgtatttaatacaatgaaacatcaaaaagtaactttttctacataaaagttatcaactg 5497837  T
Q  168 tttccaatttttgaatccttaac 190  Q
    |||||| ||| ||||||||||||    
T  5497838 tttccattttctgaatccttaac 5497860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 26009825 - 26009675
Alignment:
Q  41 aaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaa 140  Q
    ||||||||||||||||||| |||  ||||||||| || |||||| | |||| ||||||||||||||| || ||| |||  ||||||| || |||||||||    
T  26009825 aaatgttaacaagtgcccttaagacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattcaaaatattgaaatattaaaaagcaa 26009726  T
Q  141 ctttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    |||||| ||||| ||||||| ||||| ||| | ||||| |||||||||||||    
T  26009725 ctttttatacataaaagttagcaattattt-ctattttagaatccttaacaa 26009675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 54639833 - 54639678
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaa 135  Q
    |||||||||| || ||||| |||||| ||  ||| |||| ||||||||| |  ||||||||| |||| |||| || ||| ||   |||||||||||||||    
T  54639833 aagggaaatgctagcaagttccctaagggccctttataagaagtttaaagtagaaattttattttgggatttgtgtattgaacaaattgaaacatcaaaa 54639734  T
Q  136 agcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    |||||||||||||||||||||| |||||||||||| | |||||| |||| |||||||    
T  54639733 agcaactttttctacatgaaagctatcaattgttttc-atttttaaatctttaacaa 54639678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 3775311 - 3775466
Alignment:
Q  47 taacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaacttttt 146  Q
    ||||||||| ||| |||  |||||||||||| |||||  | |||||||||||||| ||||| |  ||||||  ||||||||||||||||| |||| ||||    
T  3775311 taacaagtgacctcaagacacttgataaaaaatttaatgtaaaaattttatcttgtaatttgtatattaaacacattgaaacatcaaaaaacaacatttt 3775410  T
Q  147 ctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttcttaaa 203  Q
    |||||| |||  |||||||||||| |  ||||| |||||||||||| ||| ||||||    
T  3775411 ctacataaaaactatcaattgttttc-ttttttaaatccttaacaaatgtccttaaa 3775466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 23568148 - 23568013
Alignment:
Q  31 aaaagaagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacat 130  Q
    |||| |||||||||||||||||||| ||||  || ||||||||| |||||| ||||| ||| ||||||||| ||||| |  ||| ||  |||||||| ||    
T  23568148 aaaataagggaaatgttaacaagtgtcctaggggcacttgataagaagttttaaatggaaactttatcttgaaatttgtatattcaatacattgaaaaat 23568049  T
Q  131 caaaaagcaactttttctacatgaaagttatcaatt 166  Q
    ||||||| ||| ||||||| || |||||||||||||    
T  23568048 caaaaagtaacattttctatataaaagttatcaatt 23568013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 51834853 - 51834740
Alignment:
Q  88 aaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatcctt 187  Q
    |||||||||||||| ||||| || ||| || || |||||||| |||||||||||||| |||||||||||||||||| || |||| | |||||  ||| ||    
T  51834853 aaaattttatcttgaaatttgtgtattcaactcgttgaaacaccaaaaagcaactttatctacatgaaagttatcatttatttctattttttttatcatt 51834754  T
Q  188 aacaagtgttctta 201  Q
    |||||||| |||||    
T  51834753 aacaagtgctctta 51834740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 21240170 - 21240245
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    |||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  21240170 cattgaaatattaaaaaacaactttttctacgtgaaagttatcaattgtttcc-atttttaaatccttaacaagtgt 21240245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 37626931 - 37627049
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||| |||||||||| | ||  ||| ||||||| ||| || ||| ||  |||| |||||| |||||| |||||||||||||| ||||||||||||    
T  37626931 acttgataagaagtttaaaagggaagctttgtcttggattttgtgtattcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaat 37627030  T
Q  166 tgtttccaatttttgaatc 184  Q
    |||||| | ||||| ||||    
T  37627031 tgtttctattttttaaatc 37627049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 48051718 - 48051791
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagt 194  Q
    |||||||||| ||||||| |||||||||||||| ||| ||||||||| ||| | |||||||||||||||||||||    
T  48051718 cattgaaacaacaaaaagtaactttttctacataaaatttatcaattattt-ctatttttgaatccttaacaagt 48051791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 11123452 - 11123560
Alignment:
Q  65 tacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaa 164  Q
    |||||||||| ||||||||| ||||||||||||| | |||||| || ||| ||   ||| |||||||||||| |||  ||||||||||  || |||| ||    
T  11123452 tacttgataagaagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaacatcaaaaatcaatcttttctacatagaaattattaa 11123551  T
Q  165 ttgtttcca 173  Q
    |||||||||    
T  11123552 ttgtttcca 11123560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 39292323 - 39292382
Alignment:
Q  93 tttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacat 152  Q
    |||||||||||| ||||||||| || | ||||||| || |||||||||||||||||||||    
T  39292323 tttatcttggaaattatgcattcaacttattgaaagattaaaaagcaactttttctacat 39292382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 2322656 - 2322583
Alignment:
Q  122 ttgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||| ||||| | |||||| |||| |||||||||||    
T  2322656 ttgaaacatcaaaaatcaattttttctacatgataattatcaaatgttttc-atttttaaatctttaacaagtgt 2322583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 22478050 - 22478108
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttt 178  Q
    |||||||| | |||||| ||||||||||| ||| |||||||||||||||||||| ||||    
T  22478050 cattgaaataacaaaaaccaactttttctccataaaagttatcaattgtttccattttt 22478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 44131109 - 44131031
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaacttttt 146  Q
    ||||||| || ||||||||| ||||||| |||||||||||||||||| ||  || |||||| |||||||| || |||||    
T  44131109 ttgataagaattttaaaatggaaattttgtcttggaatttatgcattcaacgcaatgaaacgtcaaaaagtaatttttt 44131031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 8753067 - 8753000
Alignment:
Q  129 atcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgtt 197  Q
    ||||||||||||||||||  |||| ||||||||||||| ||| | ||||| ||||| ||||||||||||    
T  8753067 atcaaaaagcaactttttacacattaaagttatcaattattt-ctattttagaatcattaacaagtgtt 8753000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 29734002 - 29733939
Alignment:
Q  38 gggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttg 101  Q
    |||||||| |||||||| |||||| || ||||| ||| |||||||||||| ||| |||||||||    
T  29734002 gggaaatgctaacaagtcccctaagggcacttgttaagaagtttaaaatggaaaatttatcttg 29733939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 56128722 - 56128668
Alignment:
Q  39 ggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaatt 93  Q
    ||||||| |||||||| |||| | || ||||| ||||||||||||||||||||||    
T  56128722 ggaaatgctaacaagttcccttagggcacttgttaaaaagtttaaaatgaaaatt 56128668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 39753937 - 39754031
Alignment:
Q  76 aagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaac----tttttctacatgaaagttatcaatt 166  Q
    ||||||||||||||| ||||||||| | |||| || ||| ||  |||||||||||| ||||  |||    ||||| |||||||||||||||||||    
T  39753937 aagtttaaaatgaaagttttatcttaggatttgtgtattcaatacattgaaacatcgaaaaataactttttttttttacatgaaagttatcaatt 39754031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 6167771 - 6167819
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaa 84  Q
    ||||||||||||||||||||| || |||| ||||||||| ||| |||||    
T  6167771 aagggaaatgttaacaagtgctctcaaggcacttgataagaagattaaa 6167819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 18915584 - 18915632
Alignment:
Q  125 aaacatcaaaaagcaactttttctacatgaaagttatcaattgtttcca 173  Q
    |||||||||||| ||| ||||| ||||| ||| ||||||||||||||||    
T  18915584 aaacatcaaaaaacaattttttttacataaaaattatcaattgtttcca 18915632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 8611825 - 8611750
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  8611825 cattgaaacatcaaaaagcaactttttctacatgaaaattatcaattgtttccaa-ttttgaatccttaacgagtgt 8611750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 41174453 - 41174290
Alignment:
Q  37 agggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaa 136  Q
    |||||||||||||||||||| ||||  | ||||||||| ||| ||||| || || ||||||||||||| || |||||| ||  |||||||| || |||||    
T  41174453 agggaaatgttaacaagtgctctaagagcacttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaa 41174354  T
Q  137 gcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgttctta 201  Q
    | |||||| || |||| ||| ||| ||||| ||| |  |||||||||||||||||||||| ||||    
T  41174353 gtaactttgtcaacataaaatttaacaattattt-ctctttttgaatccttaacaagtgtcctta 41174290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 41360954 - 41360879
Alignment:
Q  121 attgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||||| || |||||||||| |||||||||||    
T  41360954 attgaaacatcaaaaggcaacattttctacataaaagttatcaattgttttcattttttgaatctttaacaagtgt 41360879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 19608742 - 19608871
Alignment:
Q  41 aaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaa 140  Q
    ||||||||||||||||  | |||| |||| |||| ||||| |||| | ||| ||||||||||||||| |  ||| ||  ||||||||||| |||||| ||    
T  19608742 aaatgttaacaagtgct-tcaaggcacttaataagaagttcaaaaaggaaactttatcttggaatttgtctattcaacacattgaaacattaaaaagtaa 19608840  T
Q  141 ctttttctacatgaaagttatcaattgtttc 171  Q
    |||||||||||| ||| ||||||||| ||||    
T  19608841 ctttttctacataaaaattatcaattatttc 19608871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 40323822 - 40323974
Alignment:
Q  40 gaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagca 139  Q
    ||||||||||||| |||||| | || ||||||||| | |||||||||| ||| ||||||||| || || || ||| ||  |||| ||||||||||||| |    
T  40323822 gaaatgttaacaaatgcccttatggcacttgataataggtttaaaatggaaactttatcttgaaacttgtgtattgaacacattaaaacatcaaaaagta 40323921  T
Q  140 ac--tttttctacatgaaagttatcaattgtttccaatttttgaatccttaac 190  Q
    ||  ||||| | ||| ||| ||||||||||||| || ||||| ||| ||||||    
T  40323922 actttttttttgcataaaaattatcaattgttttcattttttaaattcttaac 40323974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 9784512 - 9784382
Alignment:
Q  61 aaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagtta 160  Q
    |||| ||||||||| | |||||||||  ||||||| ||||| ||||| ||||||  |  |||| |||||||||||||     |||| ||||| |||||||    
T  9784512 aaggcacttgataagaggtttaaaatagaaattttgtcttgaaatttgtgcattttacacattaaaacatcaaaaag-----ttttatacataaaagtta 9784418  T
Q  161 tcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    |||||| |||| | ||||||||| ||||||||||||    
T  9784417 tcaattatttctattttttgaattcttaacaagtgt 9784382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 844868 - 844740
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||| ||||||||| ||  |||| ||| |||||| || || ||| ||  ||||||||||| |||||| ||| |||||  ||| ||| | ||||||    
T  844868 acttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaacattttcatcataaaattcatcaat 844769  T
Q  166 tgtttccaatttttgaatccttaacaagtg 195  Q
    ||||||| |||||| |||||||||||||||    
T  844768 tgtttcc-atttttaaatccttaacaagtg 844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 20975536 - 20975637
Alignment:
Q  70 gataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtt 169  Q
    ||||| ||| || ||||||||||||||| |||| |||  || ||| ||   ||||||||||||| || |||||||||| ||||| |||||||||||||||    
T  20975536 gataagaagctttaaatgaaaattttattttgggattcgtgtattgaacatattgaaacatcaacaaacaactttttcaacatgtaagttatcaattgtt 20975635  T
Q  170 tc 171  Q
    ||    
T  20975636 tc 20975637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 13203245 - 13203147
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagc-aactttttctacatgaaagttatcaatt 166  Q
    |||||||||||||||| ||  ||||||||| || |||||| || ||| ||  ||||||||||| |||||   |||||||||||||||||| |||||||||    
T  13203245 ttgataaaaagtttaacatagaaattttattttagaatttgtg-attcaacacattgaaacattaaaaaaataactttttctacatgaaaattatcaatt 13203147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 22101613 - 22101648
Alignment:
Q  65 tacttgataaaaagtttaaaatgaaaattttatctt 100  Q
    |||||| |||||||||||||||||||||||||||||    
T  22101613 tacttgttaaaaagtttaaaatgaaaattttatctt 22101648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 1863057 - 1863222
Alignment:
Q  29 ttaaaagaagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaac 128  Q
    |||||| || ||||||||||||||||| |||    | ||||| ||| ||||||||||   |||||||||||||||| | ||| ||| ||  ||||||||     
T  1863057 ttaaaaaaaaggaaatgttaacaagtgtccttggcgcacttgttaagaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaag 1863156  T
Q  129 atcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
     | |||||| |||||| ||||||| ||| || | |||| ||| | || |||||||||||||| ||||    
T  1863157 tttaaaaagtaactttatctacataaaacttgtaaattattt-ctatatttgaatccttaactagtg 1863222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 34362567 - 34362499
Alignment:
Q  84 aatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacat 152  Q
    |||| |||||||||| | ||| ||||||||| ||  |||||||||| |||||||  |||||||||||||    
T  34362567 aatggaaattttatcgtagaaattatgcattcaatacattgaaacaacaaaaagtgactttttctacat 34362499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 42035796 - 42035859
Alignment:
Q  132 aaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||||||||| | ||||| ||| ||||||||||| | | ||||||| |||||||||||||||    
T  42035796 aaaaagcaactttatttacataaaaattatcaattgtgt-ctatttttggatccttaacaagtgt 42035859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 3237411 - 3237308
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    |||||||||||||||||||||| ||||||||||||||| ||| || ||| ||   |||||||||||||| ||||| ||||| ||||||||||||||||||    
T  3237411 acttgataaaaagtttaaaatgcaaattttatcttggattttgtgtattcaacctattgaaacatcaaagagcaattttttttacatgaaagttatcaat 3237312  T
Q  166 tgtt 169  Q
    ||||    
T  3237311 tgtt 3237308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 24423438 - 24423549
Alignment:
Q  80 ttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaattttt 179  Q
    ||||| ||||||||||||||||  ||||||| ||| ||  |||||||||| |||||| ||||||||||||||||||||| ||| ||||||||| |||| |    
T  24423438 ttaaattgaaaattttatcttgagatttatgtattcaacacattgaaacaccaaaaaacaactttttctacatgaaagtcatcgattgtttcc-atttat 24423536  T
Q  180 gaatccttaacaa 192  Q
     ||||||||||||    
T  24423537 taatccttaacaa 24423549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 30424887 - 30424958
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||  |||||||||||    
T  30424887 cattgaaacatcaaaaagaaactttttctacatgaaagttagcaattgtttcc-atttttttatccttaacaa 30424958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 34004873 - 34004758
Alignment:
Q  79 tttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttt 178  Q
    ||||||||| ||| ||||||||||||||| || ||  ||  |||||||||||| |||  |||||||||||||||||||| | |||||||||| ||| |||    
T  34004873 tttaaaatggaaaatttatcttggaatttgtgtatgcaacacattgaaacatccaaagacaactttttctacatgaaagatttcaattgttttcaa-ttt 34004775  T
Q  179 tgaatccttaacaagtg 195  Q
    | |||||||||||||||    
T  34004774 taaatccttaacaagtg 34004758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 11663071 - 11662997
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||||||||| | |||||||||    
T  11663071 cattgaaacatcgaaaagcaacgttttctacatgaaagttatcaattgttt-ctatttttgaattcctaacaagtg 11662997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 28517785 - 28517859
Alignment:
Q  121 attgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    ||||||| || ||||||||||||||| ||||||||| ||| ||||| |||||| |||||||||||||||||||||    
T  28517785 attgaaagattaaaaagcaactttttttacatgaaatttaacaattatttccattttttgaatccttaacaagtg 28517859  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 39258862 - 39258955
Alignment:
Q  75 aaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtt 169  Q
    ||||||||||||| ||||||||| ||| ||||| || ||| | || ||| ||||||||||||  ||||||||||| |||||||||||||||||||    
T  39258862 aaagtttaaaatggaaattttattttgaaatttgtgtattcacat-attcaaacatcaaaaaataactttttctatatgaaagttatcaattgtt 39258955  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 12838050 - 12837894
Alignment:
Q  39 ggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagc 138  Q
    |||||||||||||| | ||||  | | ||||| ||| ||| |||||||| ||| ||||  || ||| ||||| | | ||  ||||||||||| |||||||    
T  12838050 ggaaatgttaacaaatacccttgatgcacttgttaagaagattaaaatggaaactttacattagaaattatgtaatcaagacattgaaacattaaaaagc 12837951  T
Q  139 aactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    |||||  ||||||| ||| ||||||||||||| | ||| |||||||||||||||||||    
T  12837950 aacttaatctacataaaatttatcaattgttt-ctattcttgaatccttaacaagtgt 12837894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 47188422 - 47188534
Alignment:
Q  79 tttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttt 178  Q
    ||||||||| ||||||| ||||  ||||| || | | ||  |||| ||| ||||||||| |||||||||||||| |||||||| |||||||| | |||||    
T  47188422 tttaaaatggaaattttgtcttaaaatttgtgaactcaacacattaaaatatcaaaaagtaactttttctacataaaagttattaattgttt-ctatttt 47188520  T
Q  179 tgaatccttaacaa 192  Q
    ||||||||||||||    
T  47188521 tgaatccttaacaa 47188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 22329640 - 22329571
Alignment:
Q  122 ttgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    ||||||||||||||| |||||||||||||||  ||||||| |||||||||| ||||||| ||| |||||||    
T  22329640 ttgaaacatcaaaaaacaactttttctacatataagttataaattgtttcc-atttttgtatctttaacaa 22329571  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 7711870 - 7712005
Alignment:
Q  68 ttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaattg 167  Q
    |||| |||| ||||| | |||||||||||||||   |||| || ||| ||  ||||||||||||||||| ||| ||| ||||||| |||||| ||||||     
T  7711870 ttgaaaaaaggtttagagtgaaaattttatcttcagatttgtgtatttaagacattgaaacatcaaaaaacaattttctctacataaaagttctcaatta 7711969  T
Q  168 tttccaatttttgaatccttaacaagtgttcttaaaa 204  Q
    |||   |||||| |||||| ||||| |||||||||||    
T  7711970 ttt-ttatttttaaatcctcaacaaatgttcttaaaa 7712005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 41072499 - 41072400
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    |||||||||||| ||||||||||||| ||||  || ||| || |||||| ||  |||||||||| ||||||| || |||||| |||| ||| ||||||||    
T  41072499 acttgataaaaaatttaaaatgaaaactttactttagaaattgtgcattcaacacattgaaacaacaaaaagtaattttttcaacataaaatttatcaat 41072400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 6212259 - 6212218
Alignment:
Q  69 tgataaaaagtttaaaatgaaaattttatcttggaatttatg 110  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  6212259 tgataaaaagtttaaaatgaaaattttattttagaatttatg 6212218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 35116903 - 35116975
Alignment:
Q  120 cattgaaacatcaaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaag 193  Q
    ||||||||| |||||||| || ||||||||||| ||| |||| |||| |||||  |||||||||||||||||||    
T  35116903 cattgaaacttcaaaaaggaaatttttctacataaaatttataaattatttcc-ttttttgaatccttaacaag 35116975  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 28198163 - 28198005
Alignment:
Q  36 aagggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaa-atgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaa 134  Q
    |||||||||| |||||||||||| || || ||||| | | ||||  ||| | |||| |||| |||||||| || || ||| ||  ||||||||| |||||    
T  28198163 aagggaaatgctaacaagtgccccaagggcacttgtttagaagtccaaagaagaaactttt-tcttggaaattgtgtattcaagacattgaaacttcaaa 28198065  T
Q  135 aagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtg 195  Q
    ||| |||||||||||||| ||  |||| |||| |||||   ||||||||||||||||||||    
T  28198064 aagaaactttttctacataaattttataaattatttcc-tcttttgaatccttaacaagtg 28198005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 6707738 - 6707589
Alignment:
Q  41 aaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaa 140  Q
    ||||| |||||| ||||||||    |||| |||| ||||||||| |  |||||||| |||   ||||||| ||| ||  |||| |||||| |||||  ||    
T  6707738 aaatgctaacaaatgccctaagataactttataagaagtttaaagtagaaattttaccttaatatttatgtattcaacacattaaaacattaaaaaataa 6707639  T
Q  141 ctttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaa 192  Q
    |||||| |||||||||||||||||||| |||| |||||| ||| ||||||||    
T  6707638 cttttt-tacatgaaagttatcaattgcttcc-atttttaaatacttaacaa 6707589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 7399823 - 7399945
Alignment:
Q  66 acttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacatcaaaaagcaactttttctacatgaaagttatcaat 165  Q
    ||||||||| ||||||||| || ||  |||||||||||| || |  ||| ||  ||||||||||| |||||| ||||||||  |||| ||| |||| |||    
T  7399823 acttgataagaagtttaaagtggaaggtttatcttggaagttgtttattcaacacattgaaacattaaaaagtaacttttttaacat-aaatttataaat 7399921  T
Q  166 tgtttccaatttttgaatccttaa 189  Q
    | |||||  |||||||||||||||    
T  7399922 tatttcctttttttgaatccttaa 7399945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 6241185 - 6241144
Alignment:
Q  69 tgataaaaagtttaaaatgaaaattttatcttggaatttatg 110  Q
    ||||||||||||||||||||||||||||| ||  ||||||||    
T  6241185 tgataaaaagtttaaaatgaaaattttattttaaaatttatg 6241144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 36586893 - 36586852
Alignment:
Q  125 aaacatcaaaaagcaactttttctacatgaaagttatcaatt 166  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  36586893 aaacgtcaaaaaacaactttatctacatgaaagttatcaatt 36586852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 8903017 - 8903080
Alignment:
Q  132 aaaaagcaactttttctacatgaaagttatcaattgtttccaatttttgaatccttaacaagtgt 196  Q
    ||||||||||||| | || || |||||||||||||||||   ||||||||||| |||||||||||    
T  8903017 aaaaagcaactttatttatataaaagttatcaattgttt-ttatttttgaatctttaacaagtgt 8903080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 43639022 - 43639062
Alignment:
Q  139 aactttttctacatgaaagttatcaattgtttccaattttt 179  Q
    |||||||||||||| |||||||||||||||| ||| |||||    
T  43639022 aactttttctacataaaagttatcaattgttaccatttttt 43639062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 29840 - 29749
Alignment:
Q  39 ggaaatgttaacaagtgccctaaaggtacttgataaaaagtttaaaatgaaaattttatcttggaatttatgcattaaaatcattgaaacat 130  Q
    ||||||||||| ||||||||| | || ||||||||||||||| ||| |  ||||||||||||||||||  || ||| ||  |||||||||||    
T  29840 ggaaatgttaataagtgcccttagggcacttgataaaaagttgaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacat 29749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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