View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10526_low_5 (Length: 238)
Name: NF10526_low_5
Description: NF10526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10526_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 5575849 - 5576054
Alignment:
| Q |
15 |
aagaaagagtaagatgagaaattataatctgtcaaatgcatcaaatacgttgatttgaataaagagaactcatcagtattgctatccattccaaagacta |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5575849 |
aagaaagagcaagatgagaaattataatctgtcaaatgcatcaagtacgttgatttgaataaagagaactcatcagtattgctatccattccaaagacta |
5575948 |
T |
|
| Q |
115 |
gaaataactcaaattaacttattgctttctattctacaaaataaaatatagaagaggaaaagagtaagatgagaaattaaaatctatcaaaagcatcaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5575949 |
gaaataactcaaattaacttattgctttctattctacaaaataaaaaatagaagagg--aagagtaagatgagaaattaaaatctatcaaaagcatcaaa |
5576046 |
T |
|
| Q |
215 |
taagccta |
222 |
Q |
| |
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|||||||| |
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| T |
5576047 |
taagccta |
5576054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 5575764 - 5575892
Alignment:
| Q |
85 |
catcagtattgctatccattccaaagactagaaataactcaaattaactt---attgctttctattctacaaaataaaatatagaagaggaaaagagtaa |
181 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| |||| |||| ||||| |||| ||| |||||||||||||||| |||||| || |||||| || |
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| T |
5575764 |
catcagtattagcatccattccaaagaccagaaaaaacttaaatcaacttatcattgatttacattctacaaaataaaa-atagaaaag--aaagagcaa |
5575860 |
T |
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| Q |
182 |
gatgagaaattaaaatctatcaaaagcatcaa |
213 |
Q |
| |
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|||||||||||| ||||| ||||| ||||||| |
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| T |
5575861 |
gatgagaaattataatctgtcaaatgcatcaa |
5575892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 47962818 - 47963020
Alignment:
| Q |
19 |
aagagtaagatgagaaattataatctgtcaaatgcatcaaatacgttgatttgaataaagagaactcatcagtattgctatccattccaaagactagaaa |
118 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |
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| T |
47962818 |
aagaataaggtgagaaattataatctgtcaaatgcatcaaatacgttgatttgaataaagagaactcatcagtattggtatccattcaaaagaccagaaa |
47962917 |
T |
|
| Q |
119 |
taactcaaattaacttattgctttctattctacaaaataaaatatagaagaggaaaagagtaaga-tgagaaattaaaatctatcaaaagcatcaaataa |
217 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||| | ||||||||||||||||| |
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| T |
47962918 |
taactcaaattaacttattgttttctattctacaaaataaaaaatagaagagg--aagagtaagagtaagaaattaaaatatgtcaaaagcatcaaataa |
47963015 |
T |
|
| Q |
218 |
gccta |
222 |
Q |
| |
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||||| |
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|
| T |
47963016 |
gccta |
47963020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 47962729 - 47962860
Alignment:
| Q |
85 |
catcagtattgctatccattccaaagactagaaataactcaaattaac---ttattgctttctattctacaaaataaaatatagaagaggaaaagagtaa |
181 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||| ||| | |||| ||| |||||||||||||||| |||||| ||| |||| ||| |
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| T |
47962729 |
catcagtattagcatccattccaaagaccagaaa-aactcaaatcaacaaatcattgatttacattctacaaaataaaaaatagaaaagg--aagaataa |
47962825 |
T |
|
| Q |
182 |
gatgagaaattaaaatctatcaaaagcatcaaata |
216 |
Q |
| |
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| |||||||||| ||||| ||||| |||||||||| |
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| T |
47962826 |
ggtgagaaattataatctgtcaaatgcatcaaata |
47962860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 29282235 - 29282105
Alignment:
| Q |
85 |
catcagtattgctatccattccaaagactagaaataactcaaattaactt---attgctttctattctacaaaataaaatatagaagaggaaaagagtaa |
181 |
Q |
| |
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||||||||||| ||||||||||||||| ||||| ||||||||| | ||| |||| ||| |||||||||||| ||| |||||| ||| ||||| || |
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| T |
29282235 |
catcagtattgacatccattccaaagaccagaaaaaactcaaatcagcttatcattgatttacattctacaaaattaaaaatagaaaagg--aagagaaa |
29282138 |
T |
|
| Q |
182 |
gatgagaaattaaaatctatcaaaagcatcaaa |
214 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||| |
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|
| T |
29282137 |
gatgagaaattatattctgtcaaaagcatcaaa |
29282105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 29282145 - 29282082
Alignment:
| Q |
19 |
aagagtaagatgagaaattataatctgtcaaatgcatcaaatacgttgatttgaataaagagaa |
82 |
Q |
| |
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||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||||||| |||| |
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| T |
29282145 |
aagagaaagatgagaaattatattctgtcaaaagcatcaaaaaagttgatttgaataaaaagaa |
29282082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 28294635 - 28294698
Alignment:
| Q |
19 |
aagagtaagatgagaaattataatctgtcaaatgcatcaaatacgttgatttgaataaagagaa |
82 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||| |||| |
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|
| T |
28294635 |
aagagtaagatgagaaattataatttgtcaaaagcatcaaaaaagttgatttgaataaaaagaa |
28294698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 28294611 - 28294675
Alignment:
| Q |
148 |
ctacaaaataaaatatagaagaggaaaagagtaagatgagaaattaaaatctatcaaaagcatcaaa |
214 |
Q |
| |
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||||||||||||| |||||| ||||| |||||||||||||||||| ||| | |||||||||||||| |
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| T |
28294611 |
ctacaaaataaaaaatagaaaaggaa--gagtaagatgagaaattataatttgtcaaaagcatcaaa |
28294675 |
T |
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