View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10527_high_1 (Length: 363)
Name: NF10527_high_1
Description: NF10527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10527_high_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 33699356 - 33698994
Alignment:
| Q |
1 |
cttctcattcaatctctgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcctaatataattagacaatttaaccaatt |
100 |
Q |
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| T |
33699356 |
cttctcattcaatctttgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcctaatttaattagacaatttaaccaatt |
33699257 |
T |
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| Q |
101 |
tttagtcaagttatattattctagaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcatatataaaccaaaagt |
200 |
Q |
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| T |
33699256 |
tttagtcaagttatattattctaaaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcatatataaaccaaaagt |
33699157 |
T |
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| Q |
201 |
tgcagtgcagtggagcttaccaaaagagctttggagtatgatgttccgggtatcttatttgggaaagaattgtaacctttctctactatgcagtaattct |
300 |
Q |
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| T |
33699156 |
tgcagtgcagtggagcttaccaaaagagctttggagtatgatgttccgggtatcttatttgggaaagaattgtaacctttctctactatgcagtaattct |
33699057 |
T |
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| Q |
301 |
ccttaagctgttctctataattgccttccaagttaccaaagacagagaggatcccgacattga |
363 |
Q |
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| T |
33699056 |
ccttaagctgttctctataattgccttccaagttaccaaagacagagaggatcccgacattga |
33698994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 33658407 - 33658269
Alignment:
| Q |
214 |
agcttaccaaaagagctttggagtatgatgttccgggtatcttatttgggaaagaattgtaacctttctctactatgcagtaattctccttaagctgttc |
313 |
Q |
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| T |
33658407 |
agcttaccaaaagagctttagagtatgcagttccgggtatcctatttgggaaagaattgtagcctttctctactatgttgtaattctccttaagctgctc |
33658308 |
T |
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| Q |
314 |
tctataattgccttccaagttaccaaagacagagaggat |
352 |
Q |
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| T |
33658307 |
tctataattgccttccaagttaccaaagacagagaggat |
33658269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33658670 - 33658597
Alignment:
| Q |
1 |
cttctcattcaatctctgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcct |
74 |
Q |
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||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||| | ||||||||| |
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| T |
33658670 |
cttctcaatcaatctctgctcctttttcttgcaaattatttcacttataatctcccgaattctctgcctcgcct |
33658597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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