View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10527_low_11 (Length: 225)
Name: NF10527_low_11
Description: NF10527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10527_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 43200946 - 43201155
Alignment:
| Q |
1 |
gggacactcttgagcacatcttcttcttaatagcttacatgctgcacaaggggttatagtatttagggttcctggtggacctaacatatgtcttcttccc |
100 |
Q |
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| T |
43200946 |
gggacactcttgagcacatcttcttcttaatagcttacatgctgcacaaggggttatagtatttagggttcctggtggacctaacatatgtcttcttccc |
43201045 |
T |
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| Q |
101 |
atctgatttgatgaatttgaaacatcatgatctccttctctttttatcttcttccctatctcatcaaatctctccct-gccgtacaattgcatcaaataa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43201046 |
atctgatttgatgaatttgaaacatcatgatctccttctctttttatcttcttccctatctcatcaaatctctccctggccgtacaattgcatcaaataa |
43201145 |
T |
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| Q |
200 |
ttttattaat |
209 |
Q |
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|||||||||| |
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| T |
43201146 |
ttttattaat |
43201155 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 31869410 - 31869453
Alignment:
| Q |
13 |
agcacatcttcttcttaatagcttacatgctgcacaaggggtta |
56 |
Q |
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| T |
31869410 |
agcacatcttcttctcaatagcttacatgcagcacaaggggtta |
31869453 |
T |
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