View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10527_low_3 (Length: 433)
Name: NF10527_low_3
Description: NF10527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10527_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 190 - 397
Target Start/End: Complemental strand, 8359131 - 8358912
Alignment:
| Q |
190 |
ttttactattgatccctccaatgagtgtatgatcctttgtttaccactcctnnnnnnnnttgatattaaaaactgcatttggtgtggtagaaaagatctt |
289 |
Q |
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| T |
8359131 |
ttttactattgatccctccaatgagtgtatgatcctttgtttaccactcctaaaaaaaattgatattaaaaactgcatttggtgtggtagaaaagatctt |
8359032 |
T |
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| Q |
290 |
atcgtacaagctcctcttcttgaaaacatttccatagaacaagacgacaaattttgtaataaggtatcat------------ctatccgatcaatcaaat |
377 |
Q |
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| T |
8359031 |
atcgtacaagctcctcttcttgaaaacatttccatagaacaagacgacaaattttgtaataaggtatcatctcatggttcgcctatccgatcaatcaaat |
8358932 |
T |
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| Q |
378 |
ttaatggtcgcactgtattt |
397 |
Q |
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| T |
8358931 |
ttaatggtcgcactgtattt |
8358912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 8316877 - 8317213
Alignment:
| Q |
13 |
gagagtaaaaagtgttcgaatccattcttctttttataaactccccttctctgttctttcatcttattatcttttcaaatccccctcattggaagaatta |
112 |
Q |
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| T |
8316877 |
gagagtaaaaattcttcggatccattcatctttttatcagctccccttttctgctcttacatctcattatcttttcaactgcacctccttagaagaatta |
8316976 |
T |
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| Q |
113 |
gaattggtactcaaaatgatctccac---------------catgtccattcatttaggacacctaaaattcctcaagttttatggagtctcttttacta |
197 |
Q |
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| T |
8316977 |
gaattggtactccatgtgtcctccaccataaaatttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaaga |
8317076 |
T |
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| Q |
198 |
ttgatccctccaatgagtgtatgatcctttgtttaccactcctnnnnnnnnttgatattaaaaactgcatttggtgtggtagaaaagatcttatcgtaca |
297 |
Q |
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| T |
8317077 |
ttgatacctctagcgactgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattgtaga |
8317176 |
T |
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| Q |
298 |
agctcctcttcttgaaaacatttccatagaacaagac |
334 |
Q |
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| T |
8317177 |
agctcctctacttgaaattgtttccatagaacaagac |
8317213 |
T |
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