View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10527_low_5 (Length: 284)

Name: NF10527_low_5
Description: NF10527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10527_low_5
NF10527_low_5
[»] chr7 (26 HSPs)
chr7 (19-278)||(10042898-10043153)
chr7 (179-261)||(27945019-27945101)
chr7 (180-259)||(15680789-15680868)
chr7 (182-253)||(15902808-15902879)
chr7 (179-261)||(24339620-24339702)
chr7 (176-253)||(9408330-9408407)
chr7 (144-258)||(32308101-32308211)
chr7 (181-264)||(11061077-11061160)
chr7 (179-253)||(6630911-6630985)
chr7 (179-264)||(5409835-5409920)
chr7 (193-253)||(22868028-22868088)
chr7 (182-241)||(27093415-27093474)
chr7 (182-241)||(27184827-27184886)
chr7 (179-261)||(1433432-1433514)
chr7 (176-270)||(2034410-2034504)
chr7 (178-232)||(19992008-19992062)
chr7 (180-258)||(25481883-25481961)
chr7 (194-264)||(29787383-29787453)
chr7 (182-252)||(41020483-41020553)
chr7 (181-254)||(1401010-1401083)
chr7 (179-232)||(7328690-7328743)
chr7 (180-261)||(26733282-26733363)
chr7 (179-252)||(35861951-35862024)
chr7 (180-232)||(3721100-3721152)
chr7 (181-261)||(19206028-19206108)
chr7 (180-252)||(20549778-20549850)
[»] chr8 (19 HSPs)
chr8 (179-254)||(15816128-15816203)
chr8 (180-261)||(20873047-20873128)
chr8 (173-232)||(2572049-2572108)
chr8 (178-232)||(8342979-8343033)
chr8 (180-253)||(4786338-4786411)
chr8 (193-246)||(39954292-39954345)
chr8 (179-231)||(11927085-11927137)
chr8 (179-259)||(13436963-13437043)
chr8 (181-253)||(22197743-22197815)
chr8 (203-263)||(27101491-27101551)
chr8 (180-259)||(36450754-36450833)
chr8 (178-232)||(8343323-8343377)
chr8 (180-246)||(13844596-13844662)
chr8 (179-261)||(22651954-22652036)
chr8 (180-233)||(4948658-4948711)
chr8 (193-246)||(14134692-14134745)
chr8 (179-232)||(25566848-25566901)
chr8 (179-231)||(11944673-11944725)
chr8 (181-253)||(20679396-20679468)
[»] chr6 (32 HSPs)
chr6 (181-261)||(7938094-7938174)
chr6 (179-270)||(10770673-10770764)
chr6 (179-261)||(16766675-16766757)
chr6 (180-261)||(5732510-5732591)
chr6 (180-252)||(7801156-7801228)
chr6 (181-263)||(19044440-19044522)
chr6 (180-261)||(34595112-34595193)
chr6 (180-259)||(17841589-17841668)
chr6 (180-259)||(28152079-28152157)
chr6 (180-254)||(7265593-7265667)
chr6 (179-261)||(8365518-8365600)
chr6 (179-261)||(9027156-9027238)
chr6 (179-261)||(9107369-9107451)
chr6 (191-261)||(17341675-17341745)
chr6 (180-261)||(7977830-7977911)
chr6 (180-261)||(8776973-8777054)
chr6 (179-264)||(21395307-21395391)
chr6 (193-261)||(9658857-9658925)
chr6 (182-270)||(16833277-16833365)
chr6 (180-259)||(7996378-7996457)
chr6 (180-259)||(8022344-8022423)
chr6 (180-246)||(853859-853925)
chr6 (179-261)||(3398597-3398678)
chr6 (182-232)||(7086802-7086852)
chr6 (197-259)||(10842512-10842574)
chr6 (179-261)||(12696302-12696384)
chr6 (180-246)||(19040345-19040411)
chr6 (182-232)||(26178683-26178733)
chr6 (179-261)||(34073346-34073428)
chr6 (180-261)||(426514-426595)
chr6 (179-232)||(9025493-9025546)
chr6 (179-232)||(9195753-9195806)
[»] chr3 (21 HSPs)
chr3 (180-264)||(55401050-55401134)
chr3 (179-252)||(11665931-11666004)
chr3 (176-246)||(34910310-34910380)
chr3 (180-261)||(8383235-8383316)
chr3 (181-262)||(10268487-10268568)
chr3 (180-261)||(10335286-10335367)
chr3 (182-261)||(17005621-17005700)
chr3 (179-261)||(28917979-28918061)
chr3 (179-232)||(1509546-1509599)
chr3 (180-252)||(10954939-10955011)
chr3 (180-259)||(8587021-8587100)
chr3 (179-261)||(9800018-9800100)
chr3 (179-253)||(39756222-39756296)
chr3 (180-241)||(7928448-7928509)
chr3 (193-246)||(12704000-12704053)
chr3 (173-253)||(14747547-14747628)
chr3 (181-246)||(22774071-22774136)
chr3 (179-232)||(25948886-25948939)
chr3 (206-254)||(2620079-2620127)
chr3 (194-246)||(25064902-25064954)
chr3 (180-232)||(49505154-49505206)
[»] chr4 (17 HSPs)
chr4 (180-270)||(12797338-12797427)
chr4 (182-259)||(6485613-6485690)
chr4 (181-254)||(35157986-35158059)
chr4 (180-264)||(12895274-12895358)
chr4 (181-234)||(7214523-7214576)
chr4 (193-254)||(36635309-36635370)
chr4 (180-233)||(54580023-54580076)
chr4 (180-259)||(40179636-40179715)
chr4 (191-253)||(14126122-14126184)
chr4 (180-246)||(36409512-36409577)
chr4 (180-246)||(36423678-36423743)
chr4 (180-261)||(2361975-2362056)
chr4 (180-241)||(8423718-8423779)
chr4 (180-261)||(23292986-23293067)
chr4 (179-232)||(30838217-30838270)
chr4 (179-264)||(40742566-40742651)
chr4 (144-253)||(19482654-19482759)
[»] chr1 (23 HSPs)
chr1 (180-253)||(22881616-22881689)
chr1 (179-246)||(9828037-9828104)
chr1 (181-259)||(36878441-36878519)
chr1 (179-264)||(1486708-1486793)
chr1 (193-261)||(398778-398846)
chr1 (206-261)||(10572615-10572670)
chr1 (180-259)||(46348383-46348462)
chr1 (179-261)||(5376499-5376581)
chr1 (179-261)||(9629899-9629981)
chr1 (180-254)||(37598817-37598890)
chr1 (181-253)||(5898267-5898339)
chr1 (180-232)||(22515887-22515939)
chr1 (179-227)||(25272494-25272542)
chr1 (193-261)||(34298414-34298482)
chr1 (180-244)||(41877470-41877534)
chr1 (179-246)||(7918210-7918277)
chr1 (179-246)||(24577185-24577252)
chr1 (180-234)||(14332642-14332696)
chr1 (179-253)||(47989484-47989557)
chr1 (179-232)||(1704991-1705044)
chr1 (185-270)||(48450592-48450677)
chr1 (206-254)||(2896147-2896195)
chr1 (180-244)||(39953146-39953210)
[»] chr2 (21 HSPs)
chr2 (180-264)||(31018565-31018649)
chr2 (181-261)||(18841014-18841094)
chr2 (179-246)||(12668422-12668489)
chr2 (179-261)||(20539673-20539755)
chr2 (180-261)||(20242727-20242808)
chr2 (193-254)||(27286305-27286366)
chr2 (180-261)||(30335395-30335476)
chr2 (179-264)||(36756343-36756428)
chr2 (180-264)||(15972848-15972932)
chr2 (180-264)||(18421938-18422022)
chr2 (193-261)||(21616740-21616808)
chr2 (183-259)||(23718006-23718082)
chr2 (183-259)||(24105678-24105754)
chr2 (179-261)||(15657842-15657924)
chr2 (180-261)||(19536397-19536479)
chr2 (179-261)||(34784981-34785063)
chr2 (206-263)||(11670731-11670788)
chr2 (179-260)||(30717529-30717610)
chr2 (180-232)||(34691805-34691857)
chr2 (180-232)||(34714217-34714269)
chr2 (194-270)||(36409641-36409717)
[»] scaffold0003 (1 HSPs)
scaffold0003 (179-261)||(241572-241654)
[»] scaffold0306 (1 HSPs)
scaffold0306 (180-259)||(13380-13459)
[»] scaffold0152 (1 HSPs)
scaffold0152 (180-259)||(21868-21947)
[»] chr5 (17 HSPs)
chr5 (176-254)||(10298554-10298632)
chr5 (179-253)||(11685925-11685999)
chr5 (185-259)||(14674249-14674323)
chr5 (180-246)||(33178018-33178084)
chr5 (179-264)||(19579676-19579761)
chr5 (180-261)||(21191056-21191137)
chr5 (193-246)||(35017030-35017083)
chr5 (179-255)||(3966487-3966563)
chr5 (180-252)||(6247609-6247681)
chr5 (193-253)||(27144449-27144509)
chr5 (180-259)||(16203795-16203874)
chr5 (180-246)||(28588674-28588740)
chr5 (192-261)||(22013392-22013461)
chr5 (179-232)||(36838550-36838603)
chr5 (180-229)||(43564891-43564940)
chr5 (181-261)||(36642763-36642843)
chr5 (176-232)||(41633742-41633798)
[»] scaffold0053 (1 HSPs)
scaffold0053 (180-261)||(8776-8857)
[»] scaffold0011 (1 HSPs)
scaffold0011 (181-246)||(17750-17815)
[»] scaffold0236 (1 HSPs)
scaffold0236 (179-231)||(25767-25819)
[»] scaffold0227 (1 HSPs)
scaffold0227 (191-246)||(7322-7377)
[»] scaffold0223 (1 HSPs)
scaffold0223 (179-261)||(20150-20232)
[»] scaffold0018 (1 HSPs)
scaffold0018 (181-261)||(178819-178900)
[»] scaffold0103 (1 HSPs)
scaffold0103 (195-259)||(51791-51855)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 10043153 - 10042898
Alignment:
Q  19 gttcctcctaaaaataaaataacagccactgtgtgaataccgtgttcgaggacctacaagtttcataaatcaacagctaaaggtaatttataatcaagca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10043153 gttcctcctaaaaataaaataacagccactgtgtgaataccgtgttcgaggacctacaagtttcataaatcaacggctaaaggtaatttataatcaaaca 10043054  T
Q  119 cagacattccttggatta---gtgtccc-gtgtcggacatgtgtcatatccagtaccgacagatacgacaccgacgcttataattacgctaaattatgtg 214  Q
    | ||||||||||||||||   ||||||| |||||||||||||||| ||||| ||||        ||||||| ||| ||||||||||||||||||||||||    
T  10043053 ccgacattccttggattagacgtgtcccggtgtcggacatgtgtcgtatccggtac--------acgacactgacacttataattacgctaaattatgtg 10042962  T
Q  215 aatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatctctgcttc 278  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  10042961 aatttatcaaattattagtggtgtcggcgtgtaagtgtccgtgtcgtatcggtatctttgcttc 10042898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 27945101 - 27945019
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| || |||||||| | ||| |||||||||||||| ||||||||||| ||||||| ||||||    
T  27945101 acgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgt 27945019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 15680868 - 15680789
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| ||||||||||| ||||||||||||| ||| |  |||||||||   ||||||||||| ||||||||||||    
T  15680868 cgacaccgacacttataattacactaaattatgtgattttttttaattattagctatgtcggcgtgtcagtgtccatgtc 15680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 15902879 - 15902808
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    |||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||||| ||| ||||||    
T  15902879 acaccgacacatataattacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtc 15902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 24339702 - 24339620
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| | ||||||||||||    
T  24339702 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgt 24339620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 9408330 - 9408407
Alignment:
Q  176 gatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    |||||||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||| |  |||||| |||| ||||||    
T  9408330 gatacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtc 9408407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 32308211 - 32308101
Alignment:
Q  144 gtgtcggacatgtgtcatatccagtaccgacagatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcg 243  Q
    |||||||||||||||| | ||||  |||||||    |||||| ||| | || |||||| || |||||||||| ||| |||||||||||| | ||||||||    
T  32308211 gtgtcggacatgtgtcgtgtccaacaccgaca----cgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcg 32308116  T
Q  244 tgtaagtgtccatgt 258  Q
    ||| |||||||||||    
T  32308115 tgtcagtgtccatgt 32308101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 11061077 - 11061160
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    ||||||||| ||| ||||||  ||||||||||||| ||| ||||||||||||   |||||| |||| ||||||| |||||||||    
T  11061077 gacaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatc 11061160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 6630911 - 6630985
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    |||||| |||| | ||||||||| || ||||| |||| ||| |||||||||||||| ||||||||||| ||||||    
T  6630911 acgacatcgacacatataattacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 5409835 - 5409920
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    ||||||||||| ||| ||||| | || |||||||||| ||| ||||||||||||   | || |||||| |||||||||||||||||    
T  5409835 acgacaccgacacttgtaattgcactgaattatgtgattttttcaaattattagctgtatcagcgtgtcagtgtccatgtcgtatc 5409920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 22868088 - 22868028
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||| || |||||||||| ||| ||| |||||||||| ||||||||||| ||||||    
T  22868088 tataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 27093415 - 27093474
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcgg 241  Q
    |||||||||| ||||||||| ||||||||||||| ||| | |||||||||| | ||||||    
T  27093415 acaccgacgcatataattacactaaattatgtgattttcttaaattattagcggtgtcgg 27093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 27184886 - 27184827
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcgg 241  Q
    |||||||||| ||||||||| ||||||||||||| ||| | |||||||||| | ||||||    
T  27184886 acaccgacgcatataattacactaaattatgtgattttcttaaattattagcggtgtcgg 27184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 1433514 - 1433432
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| | ||||||||| | |||| |||||| ||| |||||||||||  | ||||||||||| | ||||| ||||||    
T  1433514 acgacaccgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgt 1433432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 2034504 - 2034410
Alignment:
Q  176 gatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatc 270  Q
    |||||||||| ||| | ||||  ||| ||||||||| |||  || |||||||||||||| ||||| ||||||||| ||| |||||| || |||||    
T  2034504 gatacgacactgacacatatatatacactaaattatatgatattctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagtatc 2034410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 19992062 - 19992008
Alignment:
Q  178 tacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||||||| ||||||||||| || || ||||||| ||| ||||||||||||    
T  19992062 tacgacaccgacacttataattacactgaaatatgtgattttctcaaattattag 19992008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 25481961 - 25481883
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgt 258  Q
    ||||||| || ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| | |||||||||    
T  25481961 cgacaccaacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccatgt 25481883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 29787383 - 29787453
Alignment:
Q  194 ataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||||| || |||||||||| ||| |||||||||||| | ||||||||||| | ||||| ||| |||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgttaatgtccgtgttgtatc 29787453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 41020553 - 41020483
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    |||||||||| ||||||||| ||||||||||||| |||   |||||||||||  ||||| ||||| |||||    
T  41020553 acaccgacgcatataattacactaaattatgtgatttttgtaaattattagttgtgtcgacgtgtcagtgt 41020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 1401083 - 1401010
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    ||||||||  ||||||||||| || |||||||||| ||| |||||||||||| | | || |||||| |||||||    
T  1401083 gacaccgatacttataattacactgaattatgtgagtttctcaaattattagcgatatcagcgtgtcagtgtcc 1401010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 7328690 - 7328743
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| ||||||||||||    
T  7328690 acgacaccgacacatataattacactaaattatgttattttctcaaattattag 7328743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 26733363 - 26733282
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| | | ||||||  || |||||||||| ||| |||||||||||| | ||||| ||||| ||||||| ||||||    
T  26733363 cgacaccgacacatttaattagactgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgt 26733282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 35862024 - 35861951
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    ||||||| ||| |||| ||||||  | |||||||||| ||| |||||||||||||  ||||||||||| |||||    
T  35862024 acgacacagacacttacaattacattgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgt 35861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 3721152 - 3721100
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||||| | ||||||||  ||||||||||||| ||| ||||||||||||    
T  3721152 cgacaccgacacatataattatactaaattatgtgattttctcaaattattag 3721100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 19206108 - 19206028
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| | ||||||||   | |||||||||| ||| |||||||||||| | |||||||||||  |||||| ||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgt 19206028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 20549850 - 20549778
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    |||||||||| | ||||||||| || ||||| |||| ||| |||||||||||| | |||||| |||| |||||    
T  20549850 cgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 15816128 - 15816203
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||  ||||||||||| |||||||    
T  15816128 acgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcc 15816203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 20873128 - 20873047
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||    ||||||||||| ||||||| ||||||    
T  20873128 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgt 20873047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 2572049 - 2572108
Alignment:
Q  173 acagatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||| ||||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||||    
T  2572049 acagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 2572108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 8343033 - 8342979
Alignment:
Q  178 tacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||||    
T  8343033 tacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 8342979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 4786338 - 4786411
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    |||||||||| | ||||||||| || |||||||||| ||| | ||||||||| || ||||||||||| ||||||    
T  4786338 cgacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 39954292 - 39954345
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||| ||||||||||||| ||| |||||||||||| | |||||||||||    
T  39954292 tataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgt 39954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 11927085 - 11927137
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattatta 231  Q
    ||||||||||| | ||||||||| || |||||||||| |||||||||||||||    
T  11927085 acgacaccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 13436963 - 13437043
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||||||||| ||| | |||||  | |||||||||| ||| ||||||||||||   ||||||||||| ||||||||||||    
T  13436963 acgacaccgacacttgttattaccatgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtc 13437043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 22197743 - 22197815
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||| ||| ||| ||||||| ||||||||||||||||| ||||||||||||   ||| ||||||| ||||||    
T  22197743 gacactgacacttgtaattacactaaattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtc 22197815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 27101551 - 27101491
Alignment:
Q  203 ctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtat 263  Q
    ||||||||||||| ||| |||||||||||| | ||||||||||| | ||||||| ||||||    
T  27101551 ctaaattatgtgattttttcaaattattagcggtgtcggcgtgtcaatgtccatatcgtat 27101491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 36450754 - 36450833
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||||| || ||| ||||||| || |||| ||||| ||| |||||||||||||  ||||||||||| ||||||| ||||    
T  36450754 cgacacctacacttgtaattacactgaattctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 8343377 - 8343323
Alignment:
Q  178 tacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||| ||| ||| ||||||| ||||||||||||| ||| ||||||||||||    
T  8343377 tacgacactgacacttgtaattacactaaattatgtgattttttcaaattattag 8343323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 13844596 - 13844662
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||| | ||||||||| || |||||||||| ||| ||||||||||||   |||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgt 13844662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 22652036 - 22651954
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||   | |||||||||| ||| ||||||||||||   ||||||||||| ||||||| ||||||    
T  22652036 acgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 22651954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 4948711 - 4948658
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagt 233  Q
    |||||||||| ||| ||||||| || |||||||||| ||| |||||||||||||    
T  4948711 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagt 4948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 14134745 - 14134692
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||| || |||||||||| ||| ||||||||||||| |||||| |||||    
T  14134745 tataattacactgaattatgtgattttctcaaattattagtattgtcgacgtgt 14134692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 25566901 - 25566848
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||    
T  25566901 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 25566848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 11944725 - 11944673
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattatta 231  Q
    ||||||||||| | ||||||||| || | |||||||| |||||||||||||||    
T  11944725 acgacaccgacacatataattacactgagttatgtgattttatcaaattatta 11944673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 20679396 - 20679468
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||| ||||||||||| || || ||||||| ||| |||||||||||| | ||||| | ||| ||||||    
T  20679396 gacaccgacacttataattacactgaactatgtgattttctcaaattattaggggtgtcgacatgtcagtgtc 20679468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 7938174 - 7938094
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| ||||||||||| ||||||||| ||| ||| ||||||||||||   ||||||||||| ||||||||||||||    
T  7938174 gacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgt 7938094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 10770673 - 10770764
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatc 270  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| |||||||||||||  ||| ||||||| |||||||||||||| || |||||    
T  10770673 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatc 10770764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 16766757 - 16766675
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| ||||||||||||||    
T  16766757 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgt 16766675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 5732510 - 5732591
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||  | ||||||||||| ||||||||||||||    
T  5732510 cgacaccgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgt 5732591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 7801156 - 7801228
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    |||||||||| ||| |||||||||| |||||||||| ||| |||||||||||||  ||||||||||| |||||    
T  7801156 cgacaccgacacttgtaattacgctgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgt 7801228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 19044522 - 19044440
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtat 263  Q
    ||||||||| | |||||| || || ||||||||||  || |||||||||||||  ||||||||||| ||||||||||||||||    
T  19044522 gacaccgacacatataataacactgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtccatgtcgtat 19044440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 34595193 - 34595112
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| || |||||||||| ||| |||||||||||||  ||||||||||| | ||||| ||||||    
T  34595193 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgt 34595112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 17841589 - 17841668
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||| | ||| ||||||| ||||||||||||| ||| ||||||||||||   ||||||||||| ||||||| ||||    
T  17841589 cgacaccgtcacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 17841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 28152157 - 28152079
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||  |||||||||||| ||||||| ||||    
T  28152157 cgacaccgacacttgtaattacactgaattatgtgatttt-tcaaattattagctttgtcggcgtgtcagtgtccgtgtc 28152079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 7265593 - 7265667
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    |||||||||| | ||||||||| || |||||||||| ||| |||||||||||| | ||| ||||||| |||||||    
T  7265593 cgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtcc 7265667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 8365518 - 8365600
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| |  ||||||||||  || |||||||||||||  ||||||||||| ||||||| ||||||    
T  8365518 acgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgt 8365600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 9027238 - 9027156
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| | ||||||||| |  |||||||||| | | |||||||||||| | ||||||||||| ||||||| ||||||    
T  9027238 acgacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgt 9027156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 9107369 - 9107451
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| || |||| ||||| ||| ||||||||||||   ||||||||||| ||||||| ||||||    
T  9107369 acgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgt 9107451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 17341675 - 17341745
Alignment:
Q  191 cttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| || |||||||||| |||||||||||||||  | ||||||||||| |||| || ||||||    
T  17341675 cttataattacactgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagtgcccgtgtcgt 17341745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 7977830 - 7977911
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| || |||||||| | ||| ||||||||||||   ||||||||||| ||| ||||||||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgt 7977911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 8776973 - 8777054
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||| || ||| ||||||| || |||| ||||| ||| |||||||||||||  ||||||||||| ||||||| ||||||    
T  8776973 cgacaccaacacttgtaattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgt 8777054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 21395307 - 21395391
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    ||||||||||| ||| ||||||| ||||||||||| | ||| |||||||||||| | ||| |||||||  ||||||||||| ||||    
T  21395307 acgacaccgacacttgtaattacactaaattatgt-attttctcaaattattagcggtgttggcgtgtcggtgtccatgtcatatc 21395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 9658925 - 9658857
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| || |||||||||| ||| | |||||||||| | ||||||||||| ||||||| ||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgt 9658857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 16833365 - 16833277
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatc 270  Q
    |||||||| ||| ||||||| || || ||||||| ||| |||||||||||||  ||||||||||| ||||||  |||||| || |||||    
T  16833365 acaccgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccgtatc 16833277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 7996378 - 7996457
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||||| ||||||||| || |||||| ||| ||| ||||||||||||   ||||||| ||| ||||||| ||||    
T  7996378 cgacaccgacgcatataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtc 7996457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 8022423 - 8022344
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||||| ||||||||| || |||||| ||| ||| ||||||||||||   ||||||| ||| ||||||| ||||    
T  8022423 cgacaccgacgcatataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtc 8022344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 853859 - 853925
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||| ||| ||||| | || |||||||||| ||| |||||||||||||  |||||||||||    
T  853859 cgacaccgacacttgtaattgcacttaattatgtgattttttcaaattattagttgtgtcggcgtgt 853925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 3398678 - 3398597
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||  ||||||||||| || |||||| ||| ||| ||||||||||||   ||||||||||| ||||||| ||||||    
T  3398678 acgacaccgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 3398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 7086852 - 7086802
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||| | ||||||||| ||||||||||||| ||| ||||||||||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattattag 7086802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 10842574 - 10842512
Alignment:
Q  197 attacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||| ||||||||||||| ||| |||||||||||| | |||||||||||  ||||| |||||    
T  10842574 attacactaaattatgtgattttttcaaattattagcggtgtcggcgtgtccgtgtcaatgtc 10842512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 12696384 - 12696302
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||| ||| ||| ||||||| || |||||||| | ||| ||||||||||||   ||||||||||| ||||||| ||||||    
T  12696384 acgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 12696302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 19040411 - 19040345
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||| ||| | ||||||||| || |||||||||| ||| |||||||||||| | |||||||||||    
T  19040411 cgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 19040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 26178683 - 26178733
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||| | ||| ||||| ||||||||||||| ||||||||||||||||    
T  26178683 acaccgacacatatgattacactaaattatgtgattttatcaaattattag 26178733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 34073346 - 34073428
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| | ||||||||| || ||||||| || ||| |||||||||||| | ||| ||| ||| ||||||| ||||||    
T  34073346 acgacaccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgt 34073428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 426514 - 426595
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| |||||||  | |||||||||| ||| |||||||||||    ||||||||||| ||||||| ||||||    
T  426514 cgacaccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgt 426595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 9025493 - 9025546
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| | ||||||||| || |||||||||| ||| ||||||||||||    
T  9025493 acgacaccgacacatataattacactgaattatgtgattttctcaaattattag 9025546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 9195753 - 9195806
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| ||||||||||||    
T  9195753 acgacaccgacacatataattacactaaattatgtcattttctcaaattattag 9195806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 55401134 - 55401050
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||  ||||||||| | ||||||| |||||||||    
T  55401134 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatc 55401050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 11666004 - 11665931
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    ||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||| |||||||| |||| |||||    
T  11666004 acgacaccgacacatataattacactaaattgtgtgattttatcaaattattagcgttgtcggtgtgttagtgt 11665931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 34910380 - 34910310
Alignment:
Q  176 gatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||||||| ||| ||||||| || |||||||||| ||| |||||||||||||  |||||||||||    
T  34910380 gatacgacaccgactcttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgt 34910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 8383316 - 8383235
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||||||||||| || |||||| ||| ||| |||||||||||| | ||||||||||| | ||||| ||||||    
T  8383316 cgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgt 8383235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 10268487 - 10268568
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgta 262  Q
    ||||| ||| ||| ||||||| ||||||||||||| ||| |||||||||||    ||||||||||| |||||||||||||||    
T  10268487 gacactgacacttgtaattacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccatgtcgta 10268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 10335286 - 10335367
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| || |||| ||||| ||||||| ||| |||||||||||||  ||||||||||| ||||||| ||||||    
T  10335286 cgacaccgacacttgtatttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgt 10335367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 17005621 - 17005700
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||| ||||||||||| || |||||| ||| |||||||||||||||||| ||| || | || ||||||||| ||||    
T  17005621 acaccgacacttataattacactgaattatatgattttatcaaattattagtggtgttggtgagtcagtgtccatatcgt 17005700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 28918061 - 28917979
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| ||| ||| ||||||    
T  28918061 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgt 28917979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 1509599 - 1509546
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||||    
T  1509599 acgacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 1509546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 10955011 - 10954939
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    |||||||||| ||| | ||||| || |||||||||| ||| |||||||||||||  ||||||||||| |||||    
T  10955011 cgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 10954939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 8587021 - 8587100
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| ||| ||||||| || |||||||||| ||| |||||||| |||   ||||||||||| ||||||| ||||    
T  8587021 cgacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtc 8587100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 9800100 - 9800018
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| |||| |||||| |  |||||||| | ||| |||||||||||| | ||||||||||| ||||| | ||||||    
T  9800100 acgacaccgacacttacaattacacggaattatgtaattttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgt 9800018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 39756296 - 39756222
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||||| ||| ||||||   |||||||||||| ||| | ||||||||| | |||||||||||| ||||||    
T  39756296 acgacaccgacacttgtaattatattaaattatgtgatttttttaaattattaattttgtcggcgtgtcagtgtc 39756222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 7928509 - 7928448
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcgg 241  Q
    |||||||||| | ||||||||| || |||||||||| ||| |||||||||||| | ||||||    
T  7928509 cgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcgg 7928448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 12704053 - 12704000
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||| || |||||||||  ||| |||||||||||||| |||||||||||    
T  12704053 tataattacactgaattatgtgcttttctcaaattattagtggtgtcggcgtgt 12704000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 14747628 - 14747547
Alignment:
Q  173 acagatacgacaccgacgcttataattacgctaaattatgtga-atttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||| ||||||| ||| ||| ||||||| |||||||||||||  ||| ||||||||||||   ||||||||||| ||||||    
T  14747628 acagacacgacacggacccttgtaattacactaaattatgtgatttttttcaaattattagctgtgtcggcgtgtcagtgtc 14747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 22774071 - 22774136
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||| ||||||||||| || || ||||||| ||| || ||||||||||| ||||| |||||    
T  22774071 gacaccgacacttataattacactgaaatatgtgactttgtctaattattagtggtgtcgacgtgt 22774136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 25948886 - 25948939
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||| || ||||||||||| || |||||||||| ||| ||||||||||||    
T  25948886 acgacaccaacacttataattacactgaattatgtgattttttcaaattattag 25948939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 2620079 - 2620127
Alignment:
Q  206 aattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    |||||||||| ||| |||||| ||||||| ||||||||||| |||||||    
T  2620079 aattatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgtcc 2620127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 25064954 - 25064902
Alignment:
Q  194 ataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||| ||||||||||||| ||| |||||| ||||| | |||||||||||    
T  25064954 ataattacactaaattatgtgattttttcaaatcattagcggtgtcggcgtgt 25064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 49505154 - 49505206
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||| ||| | ||||||||| ||||||||||||| ||| ||||||||||||    
T  49505154 cgacactgacacatataattacactaaattatgtgattttctcaaattattag 49505206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 12797338 - 12797427
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatc 270  Q
    |||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||| ||| |||||||| ||||||| ||||||||| |||||    
T  12797338 cgacaccgacacttgtaattacactgaattatgtgatttt-tcaaattattagttttgccggcgtgtcagtgtccgtgtcgtatccgtatc 12797427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 6485613 - 6485690
Alignment:
Q  182 acaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||| ||| ||||||| ||||||||||||| ||| ||||||||||| | ||||| ||||||| |||||| ||||    
T  6485613 acaccgacacttgtaattacactaaattatgtgattttttcaaattattaattttgtctgcgtgtaggtgtccgtgtc 6485690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 35157986 - 35158059
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    ||||||||| ||||||||||| ||||||||||||| |||  ||||||||||||   |||||||||| |||||||    
T  35157986 gacaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtcc 35158059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 12895274 - 12895358
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||||||| ||||||||||| | ||||||||||| ||| ||||||||||| |  ||||||||||| | ||| | |||||||||    
T  12895274 cgacaccgacacttataattacacaaaattatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgtatc 12895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 7214523 - 7214576
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtg 234  Q
    ||||||||||| |||||||||  |||||||||||| ||| ||||||||||||||    
T  7214523 gacaccgacgcatataattacattaaattatgtgattttctcaaattattagtg 7214576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 36635370 - 36635309
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    ||||||||| || |||||||||| ||| |||||||||||||| ||| ||||||| |||||||    
T  36635370 tataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtcc 36635309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 54580023 - 54580076
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagt 233  Q
    |||||||||| ||||||||||| || |||||||||| ||| |||||||||||||    
T  54580023 cgacaccgacacttataattacactgaattatgtgattttttcaaattattagt 54580076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 40179636 - 40179715
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||||| ||||||||| || |||||||||| ||| ||||| ||||| || ||||  ||||| ||||||| ||||    
T  40179636 cgacaccgacgcatataattacactgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgtc 40179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 14126122 - 14126184
Alignment:
Q  191 cttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||||| || |||||||||| |||||||||||||||    ||||||||||| ||||||    
T  14126122 cttataattacactgaattatgtgactttatcaaattattaacagtgtcggcgtgttagtgtc 14126184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 36409512 - 36409577
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||| | ||||||||| ||||||||||||| ||| || |||||||| || |||||||||||    
T  36409512 cgacaccgacacctataattacactaaattatgtgactttttc-aattattaatggtgtcggcgtgt 36409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 36423678 - 36423743
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||| | ||||||||| ||||||||||||| ||| || |||||||| || |||||||||||    
T  36423678 cgacaccgacacctataattacactaaattatgtgactttttc-aattattaatggtgtcggcgtgt 36423743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 2361975 - 2362056
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| ||||||||||| | ||| ||||||||||||   |||||| |||| | |||| |||||||    
T  2361975 cgacaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgtgtcaatgtcaatgtcgt 2362056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 8423718 - 8423779
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcgg 241  Q
    ||||||||||  |||||||||| || |||||||||| ||| |||||||||||| | ||||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtcgg 8423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 23292986 - 23293067
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||  || |||||||||| ||| ||||||||||||   ||||||||||| | ||||| ||||||    
T  23292986 cgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgt 23293067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 30838270 - 30838217
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||  ||||||||||| ||||||||| | | ||||||||||||||||    
T  30838270 acgacaccgatacttataattacactaaattatataattttatcaaattattag 30838217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 40742651 - 40742566
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||| |||| | ||||||||| ||| ||||| ||| ||| ||||||||||| || ||||||||| | | ||||| |||||||||    
T  40742651 acgacatcgacacatataattacactagattatatgattttctcaaattattaatggtgtcggcgtttcaatgtccgtgtcgtatc 40742566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 19482759 - 19482654
Alignment:
Q  144 gtgtcggacatgtgtcatatccagtaccgacagatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcg 243  Q
    |||||||||| ||||| | |||| ||||||||    ||||||| || ||| ||||||| |  ||||||||||  || |||||||||||||  ||||||||    
T  19482759 gtgtcggacacgtgtcgtgtccaataccgaca----cgacaccaacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcg 19482664  T
Q  244 tgtaagtgtc 253  Q
    ||| ||||||    
T  19482663 tgtcagtgtc 19482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 22881616 - 22881689
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||  ||||||||||| ||||||    
T  22881616 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 22881689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 9828104 - 9828037
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||||| | || |||||| || |||||||||| |||||||||||||||||| |||||||||||    
T  9828104 acgacaccgacacataaaattacactgaattatgtgattttatcaaattattagtggtgtcggcgtgt 9828037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 36878519 - 36878441
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||||||| | ||||||||| || |||||||||| ||| |||||||||||| | ||||||||||| |||||| |||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtc 36878441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 1486708 - 1486793
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    ||||||||||| ||||||||||| || |||||||||| ||| ||||||||||||   |||| |||||| ||| ||| |||||||||    
T  1486708 acgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatc 1486793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 398778 - 398846
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| || |||||||||| ||| |||||||||||| | ||||||||||| ||||||| ||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgt 398846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 10572615 - 10572670
Alignment:
Q  206 aattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| |||||||||||||| ||||||||||| ||||| ||||||||    
T  10572615 aattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgt 10572670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 46348383 - 46348462
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| ||| ||||||| ||||||||| ||| ||| ||||||||||||   ||||||||||| ||||||| ||||    
T  46348383 cgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 5376499 - 5376581
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| || |||||||| | ||| | |||||||||| | ||||||||||| ||||||| ||||||    
T  5376499 acgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgt 5376581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 9629899 - 9629981
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| |||||||| || || |||||| ||| |||||||||||||||| | |||||  ||||  |||||||||||||    
T  9629899 acgacaccgacacttataatcacactgaattatatgattttatcaaattattagcggtgtcgatgtgtcggtgtccatgtcgt 9629981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 37598890 - 37598817
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    |||||||||| ||||||||||| || |||| ||||| ||| |||||||||||||  ||||||||||| |||||||    
T  37598890 cgacaccgacacttataattacactgaatt-tgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcc 37598817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 5898267 - 5898339
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||||| ||||||||| || |||||||||| ||| ||| |||||||| | ||||||||| | ||||||    
T  5898267 gacaccgacgcatataattacactgaattatgtgattttttcagattattagcggtgtcggcgtctcagtgtc 5898339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 22515887 - 22515939
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||||    
T  22515887 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 22515939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 25272542 - 25272494
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaatt 227  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| |||||||    
T  25272542 acgacaccgacacttataattacactaaattatgtgattttctcaaatt 25272494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 34298482 - 34298414
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| || |||||||||| ||| |||||||||||||| |||||| |||| ||| ||| ||||||    
T  34298482 tataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgt 34298414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 41877470 - 41877534
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgt 244  Q
    |||||||||| ||| ||||||| ||||||||||| | ||| |||||||||||| | |||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 7918210 - 7918277
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||| ||| | ||||||||| || |||||||||| ||| |||||||||||||| |||| ||||||    
T  7918210 acgacactgacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgt 7918277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 24577185 - 24577252
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| |||||||||||||  |||| ||||||    
T  24577185 acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcagcgtgt 24577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 14332642 - 14332696
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtg 234  Q
    |||||||||  | ||||||||| ||||||||||||| ||| ||||||||||||||    
T  14332642 cgacaccgagacatataattacactaaattatgtgattttctcaaattattagtg 14332696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 47989557 - 47989484
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| | ||||||||| || ||||||||||| ||||||    
T  47989557 acgacaccgacacttgtaattacactgaattatgtgatttttttaaattattattg-tgtcggcgtgtcagtgtc 47989484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 1704991 - 1705044
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||    
T  1704991 acgacaccgacacttgtaattaccctgaattatgtgattttttcaaattattag 1705044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 48450592 - 48450677
Alignment:
Q  185 ccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatc 270  Q
    ||||| ||| ||||||| ||||||||||| | ||| ||||||||||||   ||| ||||||| ||||||| |||||| || |||||    
T  48450592 ccgacacttgtaattacactaaattatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccgtatc 48450677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 2896147 - 2896195
Alignment:
Q  206 aattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    |||||||||| ||| |||||||||||| | ||||||||||| |||||||    
T  2896147 aattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 2896195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 39953146 - 39953210
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgt 244  Q
    |||||||||| | || |||||| ||||||||||||| ||| | |||||||||| | |||||||||    
T  39953146 cgacaccgacacatacaattacactaaattatgtgattttctaaaattattagcggtgtcggcgt 39953210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 31018649 - 31018565
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||||||| | ||||||||| |||||| |||||| ||| | |||||||||| | ||| ||||||| |||||||||||||||||    
T  31018649 cgacaccgacacctataattacactaaatcatgtgattttctgaaattattagcggtgttggcgtgtcagtgtccatgtcgtatc 31018565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 18841014 - 18841094
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| ||| ||||||| || |||||||| | ||| |||||||||||||  |||| |||||| ||||||||||||||    
T  18841014 gacaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgt 18841094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 12668422 - 12668489
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||||| ||||||||||| || |||||||| | ||| |||||||||||||  |||||||||||    
T  12668422 acgacaccgacacttataattacactgaattatgtcattttttcaaattattagttatgtcggcgtgt 12668489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 20539673 - 20539755
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| ||| ||||||| ||||||||| ||| ||| ||||||||||||   ||||| ||||| ||||||| ||||||    
T  20539673 acgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgt 20539755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 20242727 - 20242808
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| | ||||||||| || |||||||||| ||| | |||  ||||||  ||||||||||| ||||||||||||||    
T  20242727 cgacaccgacacatataattacactgaattatgtgattttctaaaaaaattagttgtgtcggcgtgtcagtgtccatgtcgt 20242808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 27286305 - 27286366
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    ||||||||| || ||||||||||  ||||||||||||||| ||||||||||| | |||||||    
T  27286305 tataattacacttaattatgtgatcttatcaaattattagcgttgtcggcgtatcagtgtcc 27286366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 30335476 - 30335395
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||  || ||||||| ||||||||||| | ||| |||||||||||||  ||||||||||  ||||||| ||||||    
T  30335476 cgacaccgacatttgtaattacactaaattatgtcattttttcaaattattagttgtgtcggcgtgctagtgtccgtgtcgt 30335395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 36756343 - 36756428
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    ||||||||||| ||||||||||| || |||||||| | ||  |||||||||||||  ||||| ||||| ||||||  |||||||||    
T  36756343 acgacaccgacacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgtcgtatc 36756428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 15972932 - 15972848
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||||||| ||| ||||||| || |||| ||| | ||| ||||||||||| |  ||||||||||| ||||||| |||||||||    
T  15972932 cgacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatc 15972848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 18422022 - 18421938
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    |||||||||| ||| ||||||| || ||||||||||  || | ||||||||| |  ||||||||||| ||||||| |||||||||    
T  18422022 cgacaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatc 18421938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 21616808 - 21616740
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| || |||||||||| ||| |||||||||||| | |||||||||||  |||||| ||||||    
T  21616808 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgt 21616740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 23718082 - 23718006
Alignment:
Q  183 caccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||||| | ||||||||| || |||||||||| ||| |||||||||||| | |||||| |||| ||||||| ||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 23718006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 24105754 - 24105678
Alignment:
Q  183 caccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||||| | ||||||||| || |||||||||| ||| |||||||||||| | |||||| |||| ||||||| ||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 24105678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 15657924 - 15657842
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||||  || ||||||| || |||||||||| |||  ||||||||||||   |||||||||| ||||||| ||||||    
T  15657924 acgacaccgacatttgtaattacactgaattatgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtcgt 15657842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 19536397 - 19536479
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttat-caaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| || |||||||||| ||| | ||||||||||||  ||||||||||| | ||||| ||||||    
T  19536397 cgacaccgacacttgtaattacactgaattatgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgt 19536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 34784981 - 34785063
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| | ||||||||| ||||||||||||| ||| | |||  ||||||  |||||| |||| ||||||| ||||||    
T  34784981 acgacaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgtcgt 34785063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 11670788 - 11670731
Alignment:
Q  206 aattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtat 263  Q
    |||||||||| ||| ||||||||||||||  |||| ||||| |||||| |||||||||    
T  11670788 aattatgtgattttttcaaattattagtggcgtcgacgtgtcagtgtctatgtcgtat 11670731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 30717529 - 30717610
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcg 260  Q
    |||||| |||| ||| ||||||| || |||||||||| ||| ||||||||||||  |||||||  ||| ||||||| |||||    
T  30717529 acgacatcgacacttgtaattacactgaattatgtgattttttcaaattattagctttgtcggtttgtcagtgtccgtgtcg 30717610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 34691805 - 34691857
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||||| | ||||||||| || |||||| ||| ||||||||||||||||    
T  34691805 cgacaccgacacatataattacactgaattatatgattttatcaaattattag 34691857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 34714217 - 34714269
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    |||||||||| | ||||||||| || |||||| ||| ||||||||||||||||    
T  34714217 cgacaccgacacatataattacactgaattatatgattttatcaaattattag 34714269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 36409641 - 36409717
Alignment:
Q  194 ataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatcggtatc 270  Q
    |||||||| ||||||||||||| ||| ||||||||| || | ||||||| ||| ||| ||| |||||| || |||||    
T  36409641 ataattacactaaattatgtgattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtctgtatc 36409717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 241654 - 241572
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||||| || |||||||| ||||||||||||| |||  |||||||||||   ||||||||||| ||||||| ||||||    
T  241654 acgacaccgacactcataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 241572  T

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Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 13459 - 13380
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| ||| ||||| | || |||||||||| ||| |||||||||||||  ||||||||||| ||||||| ||||    
T  13459 cgacaccgacccttgtaattgcactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

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Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 21868 - 21947
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| ||| ||||| | || |||||||||| ||| |||||||||||||  ||||||||||| ||||||| ||||    
T  21868 cgacaccgacccttgtaattgcactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 10298632 - 10298554
Alignment:
Q  176 gatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcc 254  Q
    |||||||||||||| ||| |||||||  |  ||||||||| ||| |||||||||||||  ||||||||||| |||||||    
T  10298632 gatacgacaccgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggcgtgttagtgtcc 10298554  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 11685999 - 11685925
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||||| | ||||||||| |||||||||| || ||| |||||||||||| | ||||||| ||| ||||||    
T  11685999 acgacaccgacacatataattacactaaattatgcgactttctcaaattattagcggtgtcggcatgtcagtgtc 11685925  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 14674323 - 14674249
Alignment:
Q  185 ccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||| ||| ||||||| ||||||||||||| ||| ||||||||||||   ||||||||||| ||||||| ||||    
T  14674323 ccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 33178084 - 33178018
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||| ||| ||||||| ||||||||||||| ||| | |||||||||||  |||||||||||    
T  33178084 cgacaccgacacttgtaattacactaaattatgtgatttttttaaattattagttgtgtcggcgtgt 33178018  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 19579761 - 19579676
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgtatc 264  Q
    ||||||||||| ||| ||||| | ||||||||||||| ||| ||||||||||||   ||||||||| | ||||||| ||| |||||    
T  19579761 acgacaccgacacttgtaattgcactaaattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatc 19579676  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 21191056 - 21191137
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||| ||| ||||||| ||||||    
T  21191056 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgt 21191137  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 35017083 - 35017030
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||| ||||||||||||| ||| |||||||||||||| | |||||||||    
T  35017083 tataattacactaaattatgtgattttctcaaattattagtggtttcggcgtgt 35017030  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 3966563 - 3966487
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtcca 255  Q
    ||||||||||| | ||||||||| || |||| ||||| ||| |||||||||||| | ||||||| ||| ||||||||    
T  3966563 acgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtcca 3966487  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 6247681 - 6247609
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgt 252  Q
    |||||||||| ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| |||||    
T  6247681 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgt 6247609  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 27144509 - 27144449
Alignment:
Q  193 tataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtc 253  Q
    ||||||||| ||||||||||||| ||  |||||||||||| | ||||||||||| ||||||    
T  27144509 tataattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtc 27144449  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 16203795 - 16203874
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    |||||||||| | ||||||||| |||||||||| || ||| ||||||||||||   ||||||| ||| ||||||| ||||    
T  16203795 cgacaccgacacatataattacactaaattatgagattttctcaaattattagcagtgtcggcatgttagtgtccgtgtc 16203874  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 28588674 - 28588740
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    |||||||||| | ||||||||| || |||||||||| ||| |||||||||||  | |||||||||||    
T  28588674 cgacaccgacacctataattacactgaattatgtgattttctcaaattattaccggtgtcggcgtgt 28588740  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 22013461 - 22013392
Alignment:
Q  192 ttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||||||||||| | |||  |||||||||||   ||||||||||| ||||||| ||||||    
T  22013461 ttataattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 22013392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 36838603 - 36838550
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| ||||||||||||    
T  36838603 acgacaccgacacatataattacactaaattatgtaattttctcaaattattag 36838550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 43564940 - 43564891
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattat 229  Q
    |||||||||| ||||||||||| ||||||||||||| |||  ||||||||    
T  43564940 cgacaccgacacttataattacactaaattatgtgatttttccaaattat 43564891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 36642763 - 36642843
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||||| |||||| |||| ||||| ||||| | ||| |||||||||||    ||||||||||| ||||||| ||||||    
T  36642763 gacaccgacacttatatttacactaaaatatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgt 36642843  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 41633798 - 41633742
Alignment:
Q  176 gatacgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattag 232  Q
    ||||||||||||||  || ||||||| || |||||||| ||||| ||||||||||||    
T  41633798 gatacgacaccgacatttgtaattacactgaattatgtaaatttttcaaattattag 41633742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 8857 - 8776
Alignment:
Q  180 cgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    |||||||||| ||| ||||||| |||||| || ||| ||| ||||||||||||   ||||||||||| ||||||| ||||||    
T  8857 cgacaccgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgt 8776  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 17750 - 17815
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||  |||| ||||||    
T  17750 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcagcgtgt 17815  T

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Target: scaffold0236 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 25767 - 25819
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattatta 231  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||    
T  25767 acgacaccgacacttataattacactaaattatgtgattttctctaattatta 25819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 7322 - 7377
Alignment:
Q  191 cttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgt 246  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||  |||||||||||    
T  7322 cttataattacactaaattatgtgatttttccaaattattagttgtgtcggcgtgt 7377  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 20232 - 20150
Alignment:
Q  179 acgacaccgacgcttataattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||||| ||| ||| ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| | ||||| ||||||    
T  20232 acgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgt 20150  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 178819 - 178900
Alignment:
Q  181 gacaccgacgcttataattacgctaaattatg-tgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtcgt 261  Q
    ||||| ||| ||| ||||||| || ||||||| ||| ||| |||||||||||||  ||||||||||| ||||||| ||||||    
T  178819 gacactgacacttgtaattacactgaattatgatgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgt 178900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 51855 - 51791
Alignment:
Q  195 taattacgctaaattatgtgaatttatcaaattattagtgttgtcggcgtgtaagtgtccatgtc 259  Q
    ||||||| || |||||||||| ||| ||||||||||||   ||||||||||| ||||||| ||||    
T  51855 taattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 51791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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