View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10527_low_9 (Length: 240)
Name: NF10527_low_9
Description: NF10527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10527_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38617599 - 38617378
Alignment:
| Q |
1 |
agaaagtttaatgggaaacaagaagagaccacgtggtgattatggagcaaaaggaagcataataaagtttccgaaaatagaaattcatgaaatgggaccc |
100 |
Q |
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| T |
38617599 |
agaaagtttaatgggaaacaagaagagatcacgtggtggttatggagcaaaaggaagcataataaagttgccaaaaatagaaattcatgaaatgggaccc |
38617500 |
T |
|
| Q |
101 |
actctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttgaggttatttcttcaa |
200 |
Q |
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| T |
38617499 |
actctacaagtgattgtaacatgtggggttgataaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttgaggttatttcttcaa |
38617400 |
T |
|
| Q |
201 |
attcttctttgactggtgattc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38617399 |
attcttctttgactggtgattc |
38617378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38581899 - 38582120
Alignment:
| Q |
1 |
agaaagtttaatgggaaacaagaagagaccacgtggtgattatggagcaaaaggaagcataataaagtttccgaaaatagaaattcatgaaatgggaccc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || |
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| T |
38581899 |
agaaagtttaatgggaaacaagaagagatcacgtggtggttatggagcaaaaggaagcataataaagttgccaaaaatagaaattcatgaaatgggatcc |
38581998 |
T |
|
| Q |
101 |
actctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttgaggttatttcttcaa |
200 |
Q |
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| T |
38581999 |
actctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttgaggttatttcttcaa |
38582098 |
T |
|
| Q |
201 |
attcttctttgactggtgattc |
222 |
Q |
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| T |
38582099 |
attcttctttaactggtgattc |
38582120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38563691 - 38563921
Alignment:
| Q |
1 |
agaaagtttaatgggaaacaagaagagaccacgtggtga------------ttatggagcaaaaggaagcataataaagtttccgaaaatagaaattcat |
88 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||| || |||||||| |||||| |
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| T |
38563691 |
agaaagtttaatgggaaacaagaagagatcacgtggtggctggtcgagttcttatggagcgaaaggaagcatag---agttgccaaaaatagagattcat |
38563787 |
T |
|
| Q |
89 |
gaaatgggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttgagg |
188 |
Q |
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| T |
38563788 |
gaaataggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagagaacgtcgatg |
38563887 |
T |
|
| Q |
189 |
ttatttcttcaaattcttctttgactggtgattc |
222 |
Q |
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|||| |||||||||||||||||| | |||||||| |
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| T |
38563888 |
ttatctcttcaaattcttctttggccggtgattc |
38563921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 38606566 - 38606720
Alignment:
| Q |
62 |
ataaagtttccgaaaatagaaattcatgaaatgggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatga |
161 |
Q |
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|||||||| || |||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38606566 |
ataaagttgccaaaaatagagatccatgaaatgggacccactctacaaataattgtaacatgtggggttgatgaacattttattttctgtgaaattatga |
38606665 |
T |
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| Q |
162 |
gaatactgcatgaagagaacgttgaggttatttcttcaaattcttctttgactgg |
216 |
Q |
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| T |
38606666 |
gaatactgcatgaagagaacgttgaggttatttcttcaaatacttctttgactgg |
38606720 |
T |
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