View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10528_low_1 (Length: 562)
Name: NF10528_low_1
Description: NF10528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10528_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Complemental strand, 1886129 - 1885593
Alignment:
| Q |
18 |
gatagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgcatcaa |
117 |
Q |
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| T |
1886129 |
gatagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgcatcaa |
1886030 |
T |
|
| Q |
118 |
ttgagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgttagtttacttcactgataagaaatct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1886029 |
ttgagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgttagtttacttcactgataagaaatcc |
1885930 |
T |
|
| Q |
218 |
agcagcagaaatctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttgagtgaatcaccaaagttgt |
317 |
Q |
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| T |
1885929 |
agcagcagaaatctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttgagtgaatcaccaaagttgt |
1885830 |
T |
|
| Q |
318 |
ccctaaaataatacgatattgtcaacttagtctataaaatagtctttgaattgagaatcctcgaccacattattccttttgagtcggtcaatttagttac |
417 |
Q |
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| T |
1885829 |
ccctaaaataatacgatattgtcaacttagtctataaaatagtctttgaattgagaatcctcgaccacattattccttttgagtcggtcaatttagttac |
1885730 |
T |
|
| Q |
418 |
taaaattattcaacagaaattaatttcatcgagaatctcccaatttcaagaattattttgaaattccatcaaatttcaaaaactaaattgtccaatctct |
517 |
Q |
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| T |
1885729 |
taaaattactcaacagaaattaatttcatcgagaatct-ccaatttcaagaattattttgaaattccatcaaatttcaaaaactaaattgtccgatctct |
1885631 |
T |
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| Q |
518 |
acaattgcaaaggcaaattggtatttcactctttgctt |
555 |
Q |
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| T |
1885630 |
acaattgcaaaggcaaattggtatttcactctttgctt |
1885593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 37213280 - 37213453
Alignment:
| Q |
20 |
tagtgcagtacttatctttacctgttctgcaaataggacttgcacaactaccctcaatggaagcctttcattttgtgcagcatgcatgcatgcatcaatt |
119 |
Q |
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| T |
37213280 |
tagtgcattgcttatctttacttgctcagagaataaaacttgcactactacccttaatggcagtcgttcgttttgagctgcgtgcatgcaggcgtcaatg |
37213379 |
T |
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| Q |
120 |
gagagtttctggcaatccattacgcggcagagtcgcttcctttcatgctcagaaagtgttggatgtgcctgtta |
193 |
Q |
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| T |
37213380 |
gagagtttttgacaatccattacacggcagagacgcttcctttcgtgctcagttagtgttggatgtgcctgtta |
37213453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 37860913 - 37860873
Alignment:
| Q |
87 |
tcattttgtgcagcatgcatgcatgcatcaattgagagttt |
127 |
Q |
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| T |
37860913 |
tcattttgtgcagcatgtatgcatgcatcaagtgagagttt |
37860873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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