View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10528_low_2 (Length: 436)
Name: NF10528_low_2
Description: NF10528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10528_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 34665292 - 34664959
Alignment:
| Q |
12 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttata |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34665292 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttgatacgactttctttgttacaatacaacctttttata |
34665193 |
T |
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| Q |
112 |
gacttgtgactatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665192 |
gacttgtgactatgagaatgtagatagactcttacataagaatagagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacg |
34665093 |
T |
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| Q |
212 |
gtaaaacatttatccttctttattattatattattctagtactaattttgagttggtagaatttgattagatcagattttcgatgaatttggtattaatt |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34665092 |
gtaaaacatttatgcttctttattattatattattcttgtactaattttgagttggtggaatttgataagatcagattttcgatgaatttggtattaatt |
34664993 |
T |
|
| Q |
312 |
caatttttgatattctacaataaatattttgata |
345 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34664992 |
caatttttgatattctacaataaatattttgata |
34664959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 34645598 - 34645297
Alignment:
| Q |
12 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttata |
111 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34645598 |
caaagggaaaacaaagaaagagttagaaaggatagtgtgttcattgttgccatcacaaatttcggtacgactttctttgttacaatacaacctttttata |
34645499 |
T |
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| Q |
112 |
gactt---gtgactatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattat-------tcattcatcattcataaaggataa |
201 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || || |
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| T |
34645498 |
gactttaattgactatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgatcattcattcatcattcatcattcataatgggaaa |
34645399 |
T |
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| Q |
202 |
aaagaaaacggtaaaacatttatccttctttattattatattattctagtactaattttgagttggtagaatttgattagatcagattttcgat-gaatt |
300 |
Q |
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|||||||||||||||| |||||| |||||||||||| |||||| |||||||||||| ||||||||| | ||||||| ||||||||||||| || ||||| |
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| T |
34645398 |
aaagaaaacggtaaaatatttatgcttctttattat--tattatactagtactaattctgagttggtgggatttgataagatcagattttcaatggaatt |
34645301 |
T |
|
| Q |
301 |
tggt |
304 |
Q |
| |
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|||| |
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|
| T |
34645300 |
tggt |
34645297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 34645255 - 34645211
Alignment:
| Q |
301 |
tggtattaattcaatttttgatattctacaataaatattttgata |
345 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34645255 |
tggtatcaattcaatttttgatattctacaataaatattttgata |
34645211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 34664547 - 34664497
Alignment:
| Q |
348 |
gtttgtttctgtaagctggttaactaagaatttaaatgtgtaaactaatga |
398 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| |||| |||||| |
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| T |
34664547 |
gtttgtttctttaagctggttaactaaaaatttaaatgtataaattaatga |
34664497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 45644696 - 45644613
Alignment:
| Q |
135 |
atagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaac |
218 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45644696 |
atagactcttacataagaatgtggcctgaaaatttgtgattattcattcatcattcataatggataaaaagaaaatggtaaaac |
45644613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 45644823 - 45644769
Alignment:
| Q |
12 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatca |
66 |
Q |
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||||||||||| |||||||| | ||||| |||||||||||||||||||||||| |
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| T |
45644823 |
caaagggaaaagaaagaaaggattagaaatgaaagtgtgttcattgttgctatca |
45644769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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