View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10528_low_3 (Length: 364)
Name: NF10528_low_3
Description: NF10528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10528_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 341
Target Start/End: Complemental strand, 16149275 - 16148959
Alignment:
| Q |
24 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgaca |
123 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16149275 |
gtacaatctagaagcaaataagcacataaaaggcttgtatgaagttaagcaacattgggttccggcgtatcttcgtggacatttctttgggggcatgaca |
16149176 |
T |
|
| Q |
124 |
acaacttgaagattagagagcatagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatga |
223 |
Q |
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|||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16149175 |
acaactggaagatcagagagcataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatga |
16149076 |
T |
|
| Q |
224 |
taatttagtttagtcatcttgttaatgnnnnnnngatgtagatttgactacaaatttattctaaattttaggttcatcttgccattgaggacattgggca |
323 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
16149075 |
taatttagtttagccatcttgttaatgttttgca-atgtagatttgactataaatttattctaaattttaggttgatctggccattgaggacattgggca |
16148977 |
T |
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| Q |
324 |
acaacaattacatcatac |
341 |
Q |
| |
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| |||||||||||||||| |
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| T |
16148976 |
aaaacaattacatcatac |
16148959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 23302786 - 23303102
Alignment:
| Q |
24 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgaca |
123 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23302786 |
gtacaatctagaagcaaataagcacataaaaggcttgtatgaagttaagcaacattgggttccggcgtatcttcgtggacatttctttgggggcatgaca |
23302885 |
T |
|
| Q |
124 |
acaacttgaagattagagagcatagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatga |
223 |
Q |
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|||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23302886 |
acaactggaagatcagagagcataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatga |
23302985 |
T |
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| Q |
224 |
taatttagtttagtcatcttgttaatgnnnnnnngatgtagatttgactacaaatttattctaaattttaggttcatcttgccattgaggacattgggca |
323 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
23302986 |
taatttagtttagccatcttgttaatg-ttttgtgatgtagatttgactataaatttattctaaattttaggttgatcttgctattgaggacattggaca |
23303084 |
T |
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| Q |
324 |
acaacaattacatcatac |
341 |
Q |
| |
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| |||||||||||||||| |
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| T |
23303085 |
aaaacaattacatcatac |
23303102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 4651882 - 4651656
Alignment:
| Q |
24 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgaca |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4651882 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgggggcatgaca |
4651783 |
T |
|
| Q |
124 |
acaacttgaagattagagagcatagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatga |
223 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4651782 |
acaacttgaagatcagagagcatagatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatga |
4651683 |
T |
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| Q |
224 |
taatttagtttagtcatcttgttaatg |
250 |
Q |
| |
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|||||||||||||||| | |||||||| |
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| T |
4651682 |
taatttagtttagtcaccgtgttaatg |
4651656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 4651631 - 4651549
Alignment:
| Q |
259 |
atgtagatttgactacaaatttattctaaattttaggttcatcttgccattgaggacattgggcaacaacaattacatcatac |
341 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4651631 |
atgtagatttgacgataaatttattctaaattttaggttcatcttgccattgaggatattgggcaacaacaattacatcatac |
4651549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 144 - 341
Target Start/End: Complemental strand, 40109678 - 40109482
Alignment:
| Q |
144 |
catagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatctt |
243 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40109678 |
cataaatgaattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
40109579 |
T |
|
| Q |
244 |
gttaatgnnnnnnngatgtagatttgactacaaatttattctaaattttaggttcatcttgccattgaggacattgggcaacaacaattacatcatac |
341 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
40109578 |
gttaatg-ttttgtgatgtagatttgactataaatttattctaaattttaggttgatcttgccattgaggacattggacaaaaacaattacatcatac |
40109482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 144 - 341
Target Start/End: Complemental strand, 36758532 - 36758336
Alignment:
| Q |
144 |
catagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatctt |
243 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36758532 |
cataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagccatctt |
36758433 |
T |
|
| Q |
244 |
gttaatgnnnnnnngatgtagatttgactacaaatttattctaaattttaggttcatcttgccattgaggacattgggcaacaacaattacatcatac |
341 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||| ||||||||| |
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| T |
36758432 |
gttaatg-ttttgtgatgtagatttgactataaatttattctaaattttaggttgatcttgccattgaagacattggacaaaaacaataacatcatac |
36758336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 152 - 341
Target Start/End: Complemental strand, 19083363 - 19083175
Alignment:
| Q |
152 |
gattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaagaatatgtatgataatttagtttagtcatcttgttaatgn |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19083363 |
gattcctaaaacgctttacttcatctcgttcatgtttaacccaacttttcaaacaagtaagaatatgtatgataatttagtttagccatcttgttaatg- |
19083265 |
T |
|
| Q |
252 |
nnnnnngatgtagatttgactacaaatttattctaaattttaggttcatcttgccattgaggacattgggcaacaacaattacatcatac |
341 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||| |
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|
| T |
19083264 |
ttttgtgatgtagatttgactataaatttattctaaattttaggttgatcttgctattgaggacattggacaaaaacaattacatcatac |
19083175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 38129243 - 38129191
Alignment:
| Q |
289 |
ttttaggttcatcttgccattgaggacattgggcaacaacaattacatcatac |
341 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||| ||||||||||||||||||| |
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|
| T |
38129243 |
ttttaggttgatcttgtcattgaagacattgggaaacaacaattacatcatac |
38129191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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