View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10528_low_5 (Length: 263)
Name: NF10528_low_5
Description: NF10528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10528_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 700127 - 700363
Alignment:
| Q |
19 |
gtatggtcaaacaaatgcatggattttgcctgatggaaaatatggagcatttgaaatcactgaaactgaggtctttgttcttacacatagagcagcactt |
118 |
Q |
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| T |
700127 |
gtatggtcaaacaaatgcatgggttttgcctgatggaaaatatggagcatttgaaatcactgaaactgaggtctttgttcttacacatagagcagcactt |
700226 |
T |
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| Q |
119 |
aaccttgcttaccagaaccactcaagagtacctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttccacttaggtctccgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
700227 |
aaccttgcttaccagaaccactcaagagtacctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttctacttaggtctccgc |
700326 |
T |
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| Q |
219 |
ttgcgttaactgaggttatatatgtacttcctatgct |
255 |
Q |
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| T |
700327 |
ttgcgttaactgaggttatatttgtacttcctatgct |
700363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 23261996 - 23261762
Alignment:
| Q |
19 |
gtatggtcaaacaaatgcatggattttgcctgatggaaaatatggagcatttgaaatcactgaaactgaggtctttgttcttacacatagagcagcactt |
118 |
Q |
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|||||||||||||||||| ||| | ||||||||||| |||||||| || ||||| || | |||||| ||||| |||||| | | ||||| ||||| ||| |
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| T |
23261996 |
gtatggtcaaacaaatgcttgggtgttgcctgatgggaaatatggggcttttgagattaatgaaacggaggtgtttgttgtagcgcatagggcagcgctt |
23261897 |
T |
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| Q |
119 |
aaccttgcttaccagaaccactcaagagtacctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttccacttaggtctccgc |
218 |
Q |
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|| ||||||||||| || ||||| || ||||||||| |||| ||||| ||||||||||| || ||||| ||||||||||| ||||| | | ||||| | |
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| T |
23261896 |
aatcttgcttaccaaaatcactctagggtacctcagaaaccgacttgtttgcttgagcttacgggtcaggatttgatcgggcttcctgtgaaatctcctc |
23261797 |
T |
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| Q |
219 |
ttgcgttaactgaggttatatatgtacttcctatg |
253 |
Q |
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|| | || | |||| |||||||||| ||||||||| |
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| T |
23261796 |
tttccttgaatgagattatatatgtgcttcctatg |
23261762 |
T |
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