View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10529_low_2 (Length: 351)
Name: NF10529_low_2
Description: NF10529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10529_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 33707003 - 33707319
Alignment:
| Q |
18 |
cacagcgcacaaaatgagtgtctttcacaataaatatagccaaaagcattaagcaatggttgtatggaaaa---gnnnnnnnnntggtgtgaatacaagt |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
33707003 |
cacatcgcacaaaatgagtgtctttcacaataaatatagccaaaagcattaagcaatggttgtatggaaaaaaagaaaaaaaaatggtgtgaatacaagt |
33707102 |
T |
|
| Q |
115 |
ctatagaatcaattcacgatcttgagtgaatatgaaactaatgccaataaatgtaaatgttgttcataaaagataaatcaaatgaaaaatccatgaacat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33707103 |
ctatagaatcaattcacgatcttgagtgaatatgaaactaatgccaataaatgtaaatgttgttcataaaagataaatc------------catgaacat |
33707190 |
T |
|
| Q |
215 |
caatctaagaattcattgtatatccgct--tagaagagtccttagatcatatgtacatcaatcaagttgtcttaacacagttaccttgatatcttcttaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33707191 |
caatctaagaattcattgtatatccgctcttaaaagagtccttagatcataggtacatcaatcaagttgtcttaacacagttaccttgatatcttcttaa |
33707290 |
T |
|
| Q |
313 |
gacaagataattagaacaatctctctctg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33707291 |
gacaagataattagaacaatctctctctg |
33707319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 32361563 - 32361626
Alignment:
| Q |
173 |
gttgttcataaaagataaatcaaatgaaaaatccatgaacatcaatctaagaattcattgtatat |
237 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||||| | ||||| |||||| ||||| ||||||||| |
|
|
| T |
32361563 |
gttgtccatacaagataaatcaaa-gaaaaatccctcaacatgaatctaggaattgattgtatat |
32361626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University