View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10529_low_4 (Length: 246)
Name: NF10529_low_4
Description: NF10529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10529_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 54179599 - 54179525
Alignment:
| Q |
155 |
ttggaattctagtgagtgatgatagatcaaatgaagggaatataagaaaaataactcatactgaatgacttattt |
229 |
Q |
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| T |
54179599 |
ttggaattctagtgagtgatgatagatcaaatgaagggaatataagaaaaataactcatactgaatgacttattt |
54179525 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 54179754 - 54179679
Alignment:
| Q |
1 |
ttaacaattgcatttgtttttgtgtaattttatcttgagattacgcacacattctttttgtatttcctccaacaac |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54179754 |
ttaacaattgcatttgtttttgtgtaattttatcttgagattaggcacacattctttttgtatttcctccaacaac |
54179679 |
T |
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