View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10529_low_5 (Length: 219)

Name: NF10529_low_5
Description: NF10529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10529_low_5
NF10529_low_5
[»] chr7 (16 HSPs)
chr7 (1-200)||(4711925-4712124)
chr7 (1-195)||(4845870-4846064)
chr7 (1-200)||(4663037-4663233)
chr7 (1-170)||(4630973-4631142)
chr7 (1-154)||(4783731-4783884)
chr7 (1-154)||(4816160-4816313)
chr7 (1-154)||(4636903-4637056)
chr7 (5-170)||(4653570-4653735)
chr7 (1-170)||(4697070-4697239)
chr7 (1-170)||(4863968-4864137)
chr7 (1-172)||(4666984-4667155)
chr7 (1-69)||(4672722-4672790)
chr7 (1-75)||(4643717-4643791)
chr7 (89-170)||(4672837-4672918)
chr7 (116-170)||(4643868-4643922)
chr7 (1-56)||(4647572-4647625)
[»] chr4 (1 HSPs)
chr4 (1-167)||(18925625-18925791)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4712124 - 4711925
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |  ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  4712124 aaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcctctgtcacatccattccataactt 4712025  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgatcacttccataaacacttgatacactttgtg 200  Q
    || || || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  4712024 cttgcagtaaagtatacagcttctggtgcagtgtaattgggaatggtattgtttaaatagtttggatgatcacttccataaacagttgatacactttgtg 4711925  T

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Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 4846064 - 4845870
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||| |||||||||||| ||| | |||||||||||    
T  4846064 aaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaacttcgaaattccaagttacattataatcctctgtcacatactttccataactt 4845965  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgatcacttccataaacacttgatacact 195  Q
    || || || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4845964 cttgcagttaagtatacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaaaacttgatacact 4845870  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 4663037 - 4663233
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| ||    
T  4663037 aaactcacaaaaatgtaaccttaccatgtatgtaaaagaagaatcaacctcaaaattccaagttacattataatcctctgtcacatactttccataattt 4663136  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgatcacttccataaacacttgatacactttgtg 200  Q
    || || || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||   |||| || ||||||||||||||||||    
T  4663137 cttgcagttaagtatacagtttctggtgcagtgtaatttggaatggtattgtttaaatagtttagatgatc---tccaaaatcacttgatacactttgtg 4663233  T

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Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4630973 - 4631142
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  4630973 aaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaattccaagttacattgtaatcctttgttgcatccattccataactt 4631072  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgat 170  Q
    || || || ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  4631073 ctcgcagttaagtaaacagcttctggtgcagtgtaatttgaaatggtattgtttaaatagtttagatgat 4631142  T

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Target: chr7; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 4783884 - 4783731
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  4783884 aaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcatacattccataactt 4783785  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgttt 154  Q
    || || || ||||| ||| ||||||||||||||||||||||||||  |||||||    
T  4783784 cttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgttt 4783731  T

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Target: chr7; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 4816313 - 4816160
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  4816313 aaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcatacattccataactt 4816214  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgttt 154  Q
    || || || ||||| ||| ||||||||||||||||||||||||||  |||||||    
T  4816213 cttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgttt 4816160  T

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Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 4636903 - 4637056
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||| |||||||| |||||| ||||||    
T  4636903 aaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattataatcctttgtctcatacattccgtaactt 4637002  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgttt 154  Q
    || || || ||||| ||| ||||||||||||||||||||||||||  |||||||    
T  4637003 cttgcagttaagtacacaacttctggtgcaatgtaatttggaatgacattgttt 4637056  T

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Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 4653570 - 4653735
Alignment:
Q  5 tcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataacttctag 104  Q
    ||||||||||||||||| |||||||||||||| |  || ||||| || |||||||||||||||||||||||||||||  ||| ||||||||||||||| |    
T  4653570 tcacaaaaatgtaacctgaccatataagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacattcattccataacttctcg 4653669  T
Q  105 cggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgat 170  Q
    | || | |||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||    
T  4653670 cagttaggtatacagcttctggtgcgatgtaatttggaattgtattgtttttatagttgagatgat 4653735  T

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Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 4697239 - 4697070
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    ||||||||||||||| |||||||||||||||||||||  |  |||||| || |||||||||||||||||| |||||||||||||||||| ||||  ||||    
T  4697239 aaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaattccaagttacattgaaatcctctgtctcatccaatccacgactt 4697140  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgat 170  Q
    || || || ||||| ||||||||||||||| |||||||| ||||||| ||||||  |||||| |||||||    
T  4697139 cttgcagttaagtacacagcttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgat 4697070  T

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Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4863968 - 4864137
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||||  ||| |  ||| ||||||    
T  4863968 aaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaattccaagttacattgtactcctctgtggcatactgtccgtaactt 4864067  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgat 170  Q
    || || || ||||| ||| ||||||||||| |||||||| ||||||| ||||||  |||||| |||||||    
T  4864068 cttgcagttaagtacacaacttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgat 4864137  T

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Target: chr7; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4666984 - 4667155
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||| | ||||||||| || ||||| |||| |||| |  |||||||||||||||||    
T  4666984 aaactcacaaaaatgcaaccttaccatataagtaaaaatagaatcaactttaaaattccatgtcacattataattctctttggcatccattccataactt 4667083  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgatca 172  Q
    || || || ||||| ||| ||||||||||| ||||||||||||| ||||| | |||||||||| ||||||||    
T  4667084 cttgcagttaagtacacaacttctggtgcagtgtaatttggaatagtattttgtaaatagtttggatgatca 4667155  T

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Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4672722 - 4672790
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacatt 69  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4672722 aaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaaaattccaagttacatt 4672790  T

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Target: chr7; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4643717 - 4643791
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatc 75  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  4643717 aaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaattccaagttacattgaaatc 4643791  T

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Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 4672837 - 4672918
Alignment:
Q  89 attccataacttctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgat 170  Q
    |||||||||||||| || || | ||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  4672837 attccataacttcttgcagttacgtaaacagcttctggtgcagtgtaatttggaatggtattgtttaaaaagttgagatgat 4672918  T

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Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 4643868 - 4643922
Alignment:
Q  116 acagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagatgat 170  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  4643868 acagcttctggtgcagtgtaatttggaatggcattttttaaatagtttagatgat 4643922  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4647572 - 4647625
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaat 56  Q
    ||||||||||||  |||||||||||||||||||||||  ||||||||| |||||||    
T  4647572 aaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 4647625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 18925791 - 18925625
Alignment:
Q  1 aaactcacaaaaatgtaaccttaccatataagtaaaagaagaatcaacctcaaaattccaagttacattgtaatcctctgtctcatccattccataactt 100  Q
    |||||| |||||||| || ||||||| ||||||||| | ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  18925791 aaactcgcaaaaatgcaatcttaccaaataagtaaaggcagaatcaacttcaaaattccaagttacattataatcctttgtcgcatccattccataactt 18925692  T
Q  101 ctagcggtcaagtatacagcttctggtgcaatgtaatttggaatggtattgtttaaatagtttagat 167  Q
    || || || ||||||||| ||||||||||  |||| ||||||||||||||||||| |||||| ||||    
T  18925691 cttgcagttaagtatacaacttctggtgccgtgtagtttggaatggtattgtttatatagttgagat 18925625  T

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