View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10530_high_2 (Length: 239)
Name: NF10530_high_2
Description: NF10530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10530_high_2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 238962 - 239186
Alignment:
| Q |
15 |
catttttcacacataaacacttttaaccttttatatacatatgtacaggtaacgtcatttcgttcttggtattcttggctccaatgtaagtatttattta |
114 |
Q |
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| T |
238962 |
catttttcacacataaacacttttaaccttttatatacatatgtacaggtaacgtcatttcgttcttggtattcttggctccaatgtaagtatttattta |
239061 |
T |
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| Q |
115 |
agtatgtatcaattaacattatgctttcattagtaaaattaaaaaataataattaatttaacttgcagatcaacattttaccgtatatacaagaagaaat |
214 |
Q |
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| T |
239062 |
agtatgtatcaattaacattatgctttcattagtaaaattaaaaaataataattaatttaacttgcagatcaacattttaccgtatatacaagaagaaat |
239161 |
T |
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| Q |
215 |
cgacagagggttttcagtcactacc |
239 |
Q |
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| T |
239162 |
cgacagagggttttcagtcactacc |
239186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 225115 - 225169
Alignment:
| Q |
185 |
caacattttaccgtatatacaagaagaaatcgacagagggttttcagtcactacc |
239 |
Q |
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| T |
225115 |
caacattttaccggatctacaagaaaaaatcaacagagggttttcagtcactacc |
225169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 224965 - 225013
Alignment:
| Q |
59 |
acaggtaacgtcatttcgttcttggtattcttggctccaatgtaagtat |
107 |
Q |
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| T |
224965 |
acaggtaatgtcatttccttcatggtatttttggctccaatgtaagtat |
225013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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