View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10530_low_11 (Length: 229)
Name: NF10530_low_11
Description: NF10530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10530_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 56174326 - 56174522
Alignment:
| Q |
15 |
caaaggctatgaggaacaaacatatttaaaagctgatgggaagaactttgctgttctggctagtgttagcaccccagatgttatgtatggaagcacattc |
114 |
Q |
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| T |
56174326 |
caaaggctatgaggaacaaacatatttaaaagctgatgggaagaactttgctgttctggctagtgttagcaccccagatgttatgtatggaagcacattc |
56174425 |
T |
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| Q |
115 |
aaggtggaattactttatctgatcacacctggaccggagttgtcatcagaagaacaatgttcacgtctggtgatatcatggagaatgaatttcttac |
211 |
Q |
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| T |
56174426 |
aaggtggaattactttatctgatcacacctggaccggagttgtcatcagaagaacaatgttcacgtctggtgatatcatggagaatgaatttcttac |
56174522 |
T |
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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 9995829 - 9996025
Alignment:
| Q |
15 |
caaaggctatgaggaacaaacatatttaaaagctgatgggaagaactttgctgttctggctagtgttagcaccccagatgttatgtatggaagcacattc |
114 |
Q |
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| T |
9995829 |
caaagcctttgaagaacagacatatttaaaagctgatgggaagaactttgccgttctagtcagtgtcagcacacctgatgttgtgtacgggagcactttt |
9995928 |
T |
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| Q |
115 |
aaggtggaattactttatctgatcacacctggaccggagttgtcatcagaagaacaatgttcacgtctggtgatatcatggagaatgaatttcttac |
211 |
Q |
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| T |
9995929 |
cgggtagaaatactttatacaatcacacctggaccggagttgccctcaggagaacagtgttcgcatctggttatatcctggcgaatgaattttttac |
9996025 |
T |
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