View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10531_high_2 (Length: 289)

Name: NF10531_high_2
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10531_high_2
NF10531_high_2
[»] chr2 (12 HSPs)
chr2 (18-280)||(44614345-44614607)
chr2 (49-261)||(44623510-44623722)
chr2 (189-279)||(39601861-39601951)
chr2 (82-152)||(39422491-39422561)
chr2 (82-152)||(39136281-39136351)
chr2 (191-281)||(39214730-39214820)
chr2 (86-152)||(39458209-39458275)
chr2 (84-148)||(39129487-39129551)
chr2 (82-152)||(39151898-39151968)
chr2 (193-247)||(39160992-39161046)
chr2 (193-247)||(39208148-39208202)
chr2 (82-152)||(39488192-39488262)
[»] chr8 (2 HSPs)
chr8 (49-177)||(44951351-44951476)
chr8 (49-168)||(40347250-40347369)
[»] chr7 (1 HSPs)
chr7 (82-152)||(19806642-19806712)
[»] chr5 (1 HSPs)
chr5 (110-150)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 44614607 - 44614345
Alignment:
Q  18 caaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatc 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614607 caaagtcctccaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatc 44614508  T
Q  118 tctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaat 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  44614507 tctctttatagaccgcaattgcctctcttctactttttgtccattgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaat 44614408  T
Q  218 gaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatct 280  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44614407 gaaatatcagctgatttgcctgaccttttatttatattcaacgaaggaatatcatcttcatct 44614345  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 49 - 261
Target Start/End: Complemental strand, 44623722 - 44623510
Alignment:
Q  49 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    |||||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44623722 cttttcagtctcaaattccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttct 44623623  T
Q  149 actttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttat 248  Q
    |||| |||||| ||||||||| | |||||       ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  44623622 acttgttgtccgttgcattccgcgaatgatttttttaacgatgcaagttctttcctcagcatggaaaatgaattatcagctgattttcctggctttttat 44623523  T
Q  249 ttatattcaacga 261  Q
    |||| ||||||||    
T  44623522 ttatgttcaacga 44623510  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 39601951 - 39601861
Alignment:
Q  189 atgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatc 279  Q
    |||||||  ||||| ||||||||||||||||  |||||| |||||||| |||||||||| ||| || |||| |||||||||||||||||||    
T  39601951 atgcaaggcctttcttcagcgaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatc 39601861  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 39422491 - 39422561
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||  | ||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 39136351 - 39136281
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  39136351 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 39214820 - 39214730
Alignment:
Q  191 gcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatctc 281  Q
    ||||| |||||| ||||||||||||||||  |||  | ||||||||||||||||||| ||| || | || || ||||||||||||||||||    
T  39214820 gcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatctc 39214730  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 39458275 - 39458209
Alignment:
Q  86 ttttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||| || ||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 39129551 - 39129487
Alignment:
Q  84 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||| | ||||||||    
T  39129551 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 39151968 - 39151898
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| ||||||||| ||| || |||||||| ||||||||| ||| ||| || | ||||||||||||    
T  39151968 cttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctactt 39151898  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 39161046 - 39160992
Alignment:
Q  193 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 247  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39161046 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39160992  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 39208148 - 39208202
Alignment:
Q  193 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 247  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39208148 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39208202  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 39488192 - 39488262
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| ||||||||  |||| | ||||| |||||||||||||||| ||| || || |||||||||||    
T  39488192 cttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 44951351 - 44951476
Alignment:
Q  49 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    ||||| |||||||||||| ||||| | ||||||||||||||| ||||||| |||||| |||| ||||||||||||||| | ||||||| |||||||||||    
T  44951351 ctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcacttcttaatatctctctttatcggccgcaattgcctctcttct 44951450  T
Q  149 actttttgtccattgcattcctcaaatga 177  Q
    ||   ||| || |||||||||||||||||    
T  44951451 ac---ttgcccgttgcattcctcaaatga 44951476  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 40347369 - 40347250
Alignment:
Q  49 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| || ||||||| | || |||| || ||||||||||||||| ||| |    
T  40347369 cttttcagattcaagtttcttaacttgggtctccatattttctagctctttgcaacacttctcaacagctttcttaatggaccgcaatcgcctcactttt 40347270  T
Q  149 actttttgtccattgcattc 168  Q
    |||| ||||| |||||||||    
T  40347269 acttgttgtctattgcattc 40347250  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 19806712 - 19806642
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  19806712 cttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 17058883 - 17058843
Alignment:
Q  110 tcaatatctctctttatagaccgcaatcgcctctcttctac 150  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  17058883 tcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

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