View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10531_low_1 (Length: 579)
Name: NF10531_low_1
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 19491322 - 19491871
Alignment:
| Q |
18 |
actgtttgttttgtttttgagaaaactaatgtatttaaaaattattcaaaatcctccaaagtacctcaatgcattttcctccatgccttaatgacnnnnn |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||| |
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| T |
19491322 |
actgtttgtttttattttgagaaaactaatgtatttaaaaattattcaaaatcctccaaagtccctcgatgcattttcctccaagccttagtgacaaaaa |
19491421 |
T |
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| Q |
118 |
nnnnnnnnn----tcataccaatagagtatgagataagaaccaccataagttaacagaaatgataaagaaccatcatcaaaacataatccaacctaaaat |
213 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19491422 |
aaaaaaaaaaaaatcataccaataaagtatgagataagaaccaccataagttaacagaaatgataaagaaccatcatcaaaacataatccaacccaaaat |
19491521 |
T |
|
| Q |
214 |
gaggagagaagacaatgacggaatataataataaccagtattacaaaaattataactcagggttcgtccttggcaaagaaactctgaggtaacctaaaat |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19491522 |
gaggagaaaagacaatgacggaatataataataaccagtattacaaaaattataactcagggttcgtccttggcaaagaaactctgaggtaacctaaaat |
19491621 |
T |
|
| Q |
314 |
cttcttcattattaagctcctcgatctcatcgtcgtctgatttctgaggttgaatgataaacaaatcaaacgtactatgttaaaacctaatccacaaaca |
413 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| |||| |
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| T |
19491622 |
cttcttcattattaagctcatcgatctcatcgtcgtctgatttctgaggtcgaatgataaacaaatcaaacgtaccatgttaaaacataagccagaaact |
19491721 |
T |
|
| Q |
414 |
aacatgttacttgaatgtgaataactgaaacttattgatagc-ataccagcatttctatgttgtagaaccgtcccaccaattcaaggacctcttcagcag |
512 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19491722 |
aacatgttacttgaatgtgaataattgaaacttattgatagcaataccagcatttctatgttgtagaaccgtcccaccaattcaaggacctcttcagcag |
19491821 |
T |
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| Q |
513 |
tgaagtgtctatcaaaactgaacgaagcatatatagttgtaagatcaaac |
562 |
Q |
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| T |
19491822 |
tgaagtgtctatcaaaactgaacgaagcatatatagttgtaagatcaaac |
19491871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 17952984 - 17952943
Alignment:
| Q |
463 |
catttctatgttgtagaaccgtcccaccaattcaaggacctc |
504 |
Q |
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| T |
17952984 |
catttctatgttgtagaaccaacccaccaattcaaggacctc |
17952943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 151 - 559
Target Start/End: Complemental strand, 19431355 - 19430947
Alignment:
| Q |
151 |
gaaccaccataagttaacagaaatgataaagaaccatcatcaaaacataatccaacctaaaatgaggagagaagacaatgacggaatataataataacca |
250 |
Q |
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||||||| |||||||||||||| ||| |||||||| |||| ||||||||||||||| ||||| ||| |||||||| ||||||| ||||||||||||||| |
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| T |
19431355 |
gaaccacaataagttaacagaatcgatgaagaaccaccatcgaaacataatccaacccaaaattaggggagaagacgatgacgggatataataataacca |
19431256 |
T |
|
| Q |
251 |
gtattacaaaaattataactcagggttcgtccttggcaaagaaactctgaggtaacctaaaatcttcttcattattaagctcctcgatctcatcgtcgtc |
350 |
Q |
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|||||||| || || |||||| ||||||||||| ||||||||| ||||| || || ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
19431255 |
tctttacaaaatttgtagctcaggattcgtccttggaaaagaaactttgaggcaagctgaaatcttcttcattattaagcacatcgatctcatcgtcgtc |
19431156 |
T |
|
| Q |
351 |
tgatttctgaggttgaatgataaacaaatcaaacgtactatgttaaaacctaatccacaaacaaacatgttacttgaatgtgaataactgaaacttattg |
450 |
Q |
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| T |
19431155 |
tgatttctgaggtagaatgataaacaattcaaacgcactatgttaaaacataaaggacaaactaacatgttatgtgaatgagaagaatcgaaacttgttg |
19431056 |
T |
|
| Q |
451 |
atagcataccagcatttctatgttgtagaaccgtcccaccaattcaaggacctcttcagcagtgaagtgtctatcaaaactgaacgaagcatatatagtt |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
19431055 |
atagcataccagcatttctatgttgtagaaccgtcccagcaattcaaggacctcgtcagcagtgaagtgtctgtcaaaactgaatgaaacatatatagtt |
19430956 |
T |
|
| Q |
551 |
gtaagatca |
559 |
Q |
| |
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||||||||| |
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| T |
19430955 |
gtaagatca |
19430947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 17448811 - 17448881
Alignment:
| Q |
281 |
ccttggcaaagaaactctgaggtaacctaaaatcttcttcattattaagctcctcgatctcatcgtcgtct |
351 |
Q |
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|||||| ||||||||| ||||| || ||||||||||||||| ||||||| |||||||| ||||||||| |
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| T |
17448811 |
ccttgggaaagaaactttgaggcaagttaaaatcttcttcatgattaagcatatcgatctcttcgtcgtct |
17448881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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