View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10531_low_11 (Length: 243)
Name: NF10531_low_11
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10083130 - 10082906
Alignment:
| Q |
1 |
tactctgaagtgaggttgcttagaagcatgacgaacagaaacatcattgcactttataatgtttggagggatgatgatcataatacactgaatttcatca |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10083130 |
tactctgaagtgagattacttagaagcatgacgaacagaaacatcattgcactttataatgtttggagggatgatgatcataatacactgaatttcatca |
10083031 |
T |
|
| Q |
101 |
ctgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcagattttgaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10083030 |
ctgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcagattttgaaagg |
10082931 |
T |
|
| Q |
201 |
gttgaattatttgcatgtgcatgat |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
10082930 |
gttgaattatttgcatgtgcatgat |
10082906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22263928 - 22263704
Alignment:
| Q |
1 |
tactctgaagtgaggttgcttagaagcatgacgaacagaaacatcattgcactttataatgtttggagggatgatgatcataatacactgaatttcatca |
100 |
Q |
| |
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|||||||||||||| | |||| || |||||| |||| |||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||||||| |
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| T |
22263928 |
tactctgaagtgagacttcttaaaaacatgacaaacaaaaacatcattgcactttacaatgtttggagggataaggagcataacacactgaatttcatca |
22263829 |
T |
|
| Q |
101 |
ctgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcagattttgaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || ||| |||| |
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| T |
22263828 |
ctgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagtggtctaaacaaatattggaagg |
22263729 |
T |
|
| Q |
201 |
gttgaattatttgcatgtgcatgat |
225 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
22263728 |
gttgaattatttgcatgttcatgat |
22263704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 22269912 - 22270136
Alignment:
| Q |
1 |
tactctgaagtgaggttgcttagaagcatgacgaacagaaacatcattgcactttataatgtttggagggatgatgatcataatacactgaatttcatca |
100 |
Q |
| |
|
|||||||||||||| | |||| || |||||| |||| |||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||||||| |
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| T |
22269912 |
tactctgaagtgagacttcttaaaaacatgacaaacaaaaacatcattgcactttacaatgtttggagggataaggagcataacacactgaatttcatca |
22270011 |
T |
|
| Q |
101 |
ctgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcagattttgaaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || ||| |||| |
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| T |
22270012 |
ctgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagtggtctaaacaaatattggaagg |
22270111 |
T |
|
| Q |
201 |
gttgaattatttgcatgtgcatgat |
225 |
Q |
| |
|
|||||||||||||||||| |||||| |
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|
| T |
22270112 |
gttgaattatttgcatgttcatgat |
22270136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45874497 - 45874273
Alignment:
| Q |
1 |
tactctgaagtgaggttgcttagaagcatgacgaacagaaacatcattgcactttataatgtttggagggatgatgatcataatacactgaatttcatca |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||| |||||||||||| ||||| |||||||||| ||||| |||||||| | ||| |||||||||| |
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|
| T |
45874497 |
tactctgaagttagattgcttagaagcatgagaaacgaaaacatcattgccctttactatgtttggagagatgaagatcataacatacttaatttcatca |
45874398 |
T |
|
| Q |
101 |
ctgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcagattttgaaagg |
200 |
Q |
| |
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|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||| |||| |
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| T |
45874397 |
ctgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagtggtctaagcaaattttggaagg |
45874298 |
T |
|
| Q |
201 |
gttgaattatttgcatgtgcatgat |
225 |
Q |
| |
|
|||||||||||||||||| |||||| |
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|
| T |
45874297 |
gttgaattatttgcatgttcatgat |
45874273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 41245892 - 41245681
Alignment:
| Q |
4 |
tctgaagtgaggttgcttagaagcatgacgaacagaaacatcattgcactttataatgtttggagggatgatgatcataatacactgaatttcatcactg |
103 |
Q |
| |
|
|||||||||||||| | |||||| |||| |||| ||||||||||| |||||||| ||||||||| |||||| | || || || ||||||||||| | |
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| T |
41245892 |
tctgaagtgaggttattgagaagcttgacaaacaaaaacatcattgaactttatagtgtttggagcgatgatcgaaacaacacgcttaatttcatcaccg |
41245793 |
T |
|
| Q |
104 |
aggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcagattttgaaagggtt |
203 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| ||||||||| | | || |||||||| ||||| | ||||||| |||||||||| |
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| T |
41245792 |
aggtttgtacaagtgggaatttgagagagtataggaagaaacatagacatgtttctatgaaggcattgaagaaatggtcaaggcagattctgaaagggtt |
41245693 |
T |
|
| Q |
204 |
gaattatttgca |
215 |
Q |
| |
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|||||||||||| |
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|
| T |
41245692 |
gaattatttgca |
41245681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 20625852 - 20625818
Alignment:
| Q |
181 |
tctaagcagattttgaaagggttgaattatttgca |
215 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
20625852 |
tctaggcagattttgaaagggttgaattatttgca |
20625818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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