View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10531_low_13 (Length: 240)
Name: NF10531_low_13
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 23071729 - 23071935
Alignment:
| Q |
18 |
cacacatgcacttacacaaaatttgattgcaagttgcaaccataccatcatctactaaaatcgaaatatcaaacttcaaaattgtgacacatttgagttg |
117 |
Q |
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| T |
23071729 |
cacacatgcacttacacaaaatttgattgccagttgcaaccataccatcatctactaaaatcgaaatatcaaacttcaaaattgtgacacatttgagttg |
23071828 |
T |
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| Q |
118 |
catcattgaatataatctcacaccataaaacttaaccacggtctcatatatcaccaaattttctagtagagcaaacaaaaagaatgaactaaccatataa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23071829 |
catcattgaatataatctcacaccataaaacttaaccacggtctcatatatcaccaaattttccagtagagcaaacaaaaagaatgaactaaccatataa |
23071928 |
T |
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| Q |
218 |
tatctat |
224 |
Q |
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||||||| |
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| T |
23071929 |
tatctat |
23071935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 23095897 - 23095967
Alignment:
| Q |
80 |
gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaatataatctcacaccataaaactt |
150 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||| | | || ||||||| ||||||| |
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| T |
23095897 |
gaaacatcaaacttcaaaattgtgacacatttgaaatgcatcattgaacagagtcacacaccaaaaaactt |
23095967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 23127592 - 23127639
Alignment:
| Q |
80 |
gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaa |
127 |
Q |
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|||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
23127592 |
gaaacatcaaactttaaaattgtgacacatttgagctgcatcattgaa |
23127639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 23096065 - 23096099
Alignment:
| Q |
190 |
aaacaaaaagaatgaactaaccatataatatctat |
224 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
23096065 |
aaacaaaaagaatgaactaaccatattatatctat |
23096099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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