View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10531_low_15 (Length: 234)
Name: NF10531_low_15
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 28959282 - 28959397
Alignment:
| Q |
15 |
atgaagaaacccaaccatgaatgttgttgttttaagattaaatgagttaaacaatcaagatttaaacttggtgaaggacaaaatactaacatatttactt |
114 |
Q |
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| T |
28959282 |
atgaagaaacccaaccatgaatgttgttgttttaagattaaatgagttaaacaatcgagatttaaacttggtgaaggacaaaatactaacatatttactt |
28959381 |
T |
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| Q |
115 |
atctaaaaaatatatc |
130 |
Q |
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| T |
28959382 |
atctaaaaaatatatc |
28959397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 28959448 - 28959485
Alignment:
| Q |
181 |
aacaattgagcctgctccagctccacaatattcaaaaa |
218 |
Q |
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| T |
28959448 |
aacaattgagcctgctccagctccacaatattcaaaaa |
28959485 |
T |
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