View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10531_low_2 (Length: 410)
Name: NF10531_low_2
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 224 - 403
Target Start/End: Complemental strand, 41023418 - 41023240
Alignment:
| Q |
224 |
gaactttgtgataaaaacattaggaaaattaaatggagtctaagattaagactttagaagtgcttccatttataattatggtgattatggaagggtgcac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41023418 |
gaactttgtgataaaaacattaggaaaat-aaatggagtctaagattaagactttagaagtgcttccattcataattatggtgattatggaagggtgcac |
41023320 |
T |
|
| Q |
324 |
cataggactaactattttagcaaaaactgtaataacaaatggaatgagtccatttgtgtttattgtttttacctatgctt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41023319 |
cataggactaactattttagcaaaaactgtaataacaaatggaatgagtccatttgtgtttattgtttataccaatgctt |
41023240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 41023618 - 41023462
Alignment:
| Q |
22 |
tctttatatttggagcacaaacattacatttcaatttcacctcaatacatagaaagagtctagttgtgttttgtggttcttattcaagctccaacaattg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41023618 |
tctttatatttggagcacaaacattacatttcaatttcacctcaatacataaagagagtctagttgtgttttgtggttcttattcaagctccaacaattg |
41023519 |
T |
|
| Q |
122 |
aggagcaccacaccaagaaacacatagctagcatatatactcaaattaattctctgtcc |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41023518 |
aggagcaccacaccaagaaacacatagctagca--tatactcaaattaattctctgtcc |
41023462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University