View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10531_low_4 (Length: 289)

Name: NF10531_low_4
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10531_low_4
NF10531_low_4
[»] chr2 (12 HSPs)
chr2 (18-280)||(44614345-44614607)
chr2 (49-261)||(44623510-44623722)
chr2 (189-279)||(39601861-39601951)
chr2 (82-152)||(39422491-39422561)
chr2 (82-152)||(39136281-39136351)
chr2 (191-281)||(39214730-39214820)
chr2 (86-152)||(39458209-39458275)
chr2 (84-148)||(39129487-39129551)
chr2 (82-152)||(39151898-39151968)
chr2 (193-247)||(39160992-39161046)
chr2 (193-247)||(39208148-39208202)
chr2 (82-152)||(39488192-39488262)
[»] chr8 (2 HSPs)
chr8 (49-177)||(44951351-44951476)
chr8 (49-168)||(40347250-40347369)
[»] chr7 (1 HSPs)
chr7 (82-152)||(19806642-19806712)
[»] chr5 (1 HSPs)
chr5 (110-150)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 44614607 - 44614345
Alignment:
Q  18 caaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatc 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614607 caaagtcctccaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatc 44614508  T
Q  118 tctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaat 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  44614507 tctctttatagaccgcaattgcctctcttctactttttgtccattgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaat 44614408  T
Q  218 gaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatct 280  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44614407 gaaatatcagctgatttgcctgaccttttatttatattcaacgaaggaatatcatcttcatct 44614345  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 49 - 261
Target Start/End: Complemental strand, 44623722 - 44623510
Alignment:
Q  49 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    |||||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44623722 cttttcagtctcaaattccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttct 44623623  T
Q  149 actttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttat 248  Q
    |||| |||||| ||||||||| | |||||       ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  44623622 acttgttgtccgttgcattccgcgaatgatttttttaacgatgcaagttctttcctcagcatggaaaatgaattatcagctgattttcctggctttttat 44623523  T
Q  249 ttatattcaacga 261  Q
    |||| ||||||||    
T  44623522 ttatgttcaacga 44623510  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 39601951 - 39601861
Alignment:
Q  189 atgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatc 279  Q
    |||||||  ||||| ||||||||||||||||  |||||| |||||||| |||||||||| ||| || |||| |||||||||||||||||||    
T  39601951 atgcaaggcctttcttcagcgaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatc 39601861  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 39422491 - 39422561
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||  | ||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 39136351 - 39136281
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  39136351 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 39214820 - 39214730
Alignment:
Q  191 gcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatctc 281  Q
    ||||| |||||| ||||||||||||||||  |||  | ||||||||||||||||||| ||| || | || || ||||||||||||||||||    
T  39214820 gcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatctc 39214730  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 39458275 - 39458209
Alignment:
Q  86 ttttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||| || ||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 39129551 - 39129487
Alignment:
Q  84 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||| | ||||||||    
T  39129551 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 39151968 - 39151898
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| ||||||||| ||| || |||||||| ||||||||| ||| ||| || | ||||||||||||    
T  39151968 cttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctactt 39151898  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 39161046 - 39160992
Alignment:
Q  193 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 247  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39161046 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39160992  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 39208148 - 39208202
Alignment:
Q  193 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 247  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39208148 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39208202  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 39488192 - 39488262
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| ||||||||  |||| | ||||| |||||||||||||||| ||| || || |||||||||||    
T  39488192 cttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 44951351 - 44951476
Alignment:
Q  49 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    ||||| |||||||||||| ||||| | ||||||||||||||| ||||||| |||||| |||| ||||||||||||||| | ||||||| |||||||||||    
T  44951351 ctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcacttcttaatatctctctttatcggccgcaattgcctctcttct 44951450  T
Q  149 actttttgtccattgcattcctcaaatga 177  Q
    ||   ||| || |||||||||||||||||    
T  44951451 ac---ttgcccgttgcattcctcaaatga 44951476  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 40347369 - 40347250
Alignment:
Q  49 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 148  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| || ||||||| | || |||| || ||||||||||||||| ||| |    
T  40347369 cttttcagattcaagtttcttaacttgggtctccatattttctagctctttgcaacacttctcaacagctttcttaatggaccgcaatcgcctcactttt 40347270  T
Q  149 actttttgtccattgcattc 168  Q
    |||| ||||| |||||||||    
T  40347269 acttgttgtctattgcattc 40347250  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 19806712 - 19806642
Alignment:
Q  82 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 152  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  19806712 cttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 17058883 - 17058843
Alignment:
Q  110 tcaatatctctctttatagaccgcaatcgcctctcttctac 150  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  17058883 tcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

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