View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10531_low_8 (Length: 263)
Name: NF10531_low_8
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_8 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 35748747 - 35748975
Alignment:
| Q |
18 |
cagagatatcaaaatattcaaaaccttcaccaaaattgaatgctgagctcttcaagtaatggacagccagaaataagaccctcaagtgcaccggactcga |
117 |
Q |
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| T |
35748747 |
cagaaatatcaaaatattcaaaaccttcac-aaaattgaatgctgagcttttcaagtaatggacagccagaaataagaccctcaagtgcaccggactcga |
35748845 |
T |
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| Q |
118 |
atgtaacattagataagtgaagattaagcaatcttttaaagccgcagaaatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactc |
217 |
Q |
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| T |
35748846 |
atgtaacattagataagtgaagattaagcaatcttttaaagcctcagaaatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactc |
35748945 |
T |
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| Q |
218 |
cttacaagcgaggacagtatatggcatttg |
247 |
Q |
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| T |
35748946 |
cttacaagcgaggacagtatatggcatttg |
35748975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 35742431 - 35742590
Alignment:
| Q |
71 |
aagtaatggacagccagaaataagaccctcaagtgcaccggactcgaatgtaacattagataagtgaagattaagcaatcttttaaagccgcagaaatca |
170 |
Q |
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| T |
35742431 |
aagtaacggacagccagaaataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatca |
35742530 |
T |
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| Q |
171 |
tgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgagg |
230 |
Q |
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| T |
35742531 |
ggtggaattgacaagtcaaatcctaaaaacttagagtacgtcaattccttacaagggagg |
35742590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 35746265 - 35746337
Alignment:
| Q |
176 |
aattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgaggacagtatatggcatttgt |
248 |
Q |
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| T |
35746265 |
aattgacaagttaaatccaccaaatttaaagtaagtcaattccttacaagagaagacagactatgtcatttgt |
35746337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 35737734 - 35737784
Alignment:
| Q |
143 |
aagcaatcttttaaagccgcagaaatcatgtggaattgacaagttaaatcc |
193 |
Q |
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| T |
35737734 |
aagcaatcttttaaagccacataaattaggtggaattgagaagttaaatcc |
35737784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 3165 - 3230
Alignment:
| Q |
57 |
atgctgagctcttcaagtaatggacagccagaaataagaccctcaagtgcaccggactcgaatgta |
122 |
Q |
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| T |
3165 |
atgctgagctcttcaagcaatgggcagccagaaataagactctcaagtgcaccaaactcgtatgta |
3230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 10862867 - 10862818
Alignment:
| Q |
61 |
tgagctcttcaagtaatggacagccagaaataagaccctcaagtgcaccg |
110 |
Q |
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| T |
10862867 |
tgagctcttcaagtaatgggcagccagcaataagactctcaagtgaaccg |
10862818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 16865900 - 16865853
Alignment:
| Q |
62 |
gagctcttcaagtaatggacagccagaaataagaccctcaagtgcacc |
109 |
Q |
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| T |
16865900 |
gagctcctcaagtaatgggcaaccagaaataagactctcaagtgcacc |
16865853 |
T |
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