View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10531_low_9 (Length: 254)
Name: NF10531_low_9
Description: NF10531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10531_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41023028 - 41022788
Alignment:
| Q |
1 |
tctctgactcaatataataaaggtgtcataatattgt-atgcaccaaaatattttaaatctaatttactaagaccatttgaatatatttgaattaaaatt |
99 |
Q |
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| T |
41023028 |
tctctgactcaatataataaaggtgtcataatattgttatgtaccaaaatattttaaatctaaattactaagacccttcgaatatatttgaattaaaatt |
41022929 |
T |
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| Q |
100 |
taaagcctaatttatgtaacatttttgttatgattgatggattttgcagaataactatgactcagacacttttatttctgggtctaagctatagttctcc |
199 |
Q |
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| T |
41022928 |
taaagcctaatttatgtaacatttttgttgtgattgatggattttgcagaataactatgactcagacacttttatttctgggtctaagctatagttctcc |
41022829 |
T |
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| Q |
200 |
aatacttgtatgtgccatgagccacttgatcccaacctttg |
240 |
Q |
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| T |
41022828 |
aatacttgtatgtgccatgagccacttgatcccaacctttg |
41022788 |
T |
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Back To:
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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 31523817 - 31523777
Alignment:
| Q |
199 |
caatacttgtatgtgccatgagccacttgatcccaaccttt |
239 |
Q |
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| T |
31523817 |
caatacttgtatgtgccatgagccacttgatcgcaaccttt |
31523777 |
T |
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