View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10532_low_3 (Length: 276)
Name: NF10532_low_3
Description: NF10532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10532_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 49290046 - 49289804
Alignment:
| Q |
20 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290046 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
49289947 |
T |
|
| Q |
120 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289946 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
49289847 |
T |
|
| Q |
220 |
ctcttgctgaatatcaccactggcctttctgaaaccacctttg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49289846 |
ctcttgctgaatatcaccactggcctttctgaaaccatctttg |
49289804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 49296997 - 49296755
Alignment:
| Q |
20 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
119 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296997 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
49296898 |
T |
|
| Q |
120 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296897 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
49296798 |
T |
|
| Q |
220 |
ctcttgctgaatatcaccactggcctttctgaaaccacctttg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49296797 |
ctcttgctgaatatcaccactggcctttctgaaaccatctttg |
49296755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 49303727 - 49303485
Alignment:
| Q |
20 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303727 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
49303628 |
T |
|
| Q |
120 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303627 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
49303528 |
T |
|
| Q |
220 |
ctcttgctgaatatcaccactggcctttctgaaaccacctttg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
49303527 |
ctcttgctgaatatcaccactggcctttctgaaaccatctttg |
49303485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 6567885 - 6568113
Alignment:
| Q |
20 |
gaagactcataacttgattggctccaccaacaagctcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttc |
119 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| || ||||| || | | || || ||| ||| |||||||||| |
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| T |
6567885 |
gaaggctcataacttcattagctccaccaacaagctcaccaccaatgaacacagcaggcacagaagggttacatcctagccttaaaa---gtgcttgttc |
6567981 |
T |
|
| Q |
120 |
aatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaa |
219 |
Q |
| |
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||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| ||||||||| | |
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| T |
6567982 |
aatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgcaacaacta |
6568081 |
T |
|
| Q |
220 |
ctcttgctgaatatcaccactggcctttctga |
251 |
Q |
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|||||||||||||||||||||| ||| ||||| |
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| T |
6568082 |
ctcttgctgaatatcaccactgacctctctga |
6568113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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