View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10533_low_1 (Length: 421)
Name: NF10533_low_1
Description: NF10533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10533_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 89 - 413
Target Start/End: Original strand, 27243496 - 27243820
Alignment:
| Q |
89 |
gatgcacataaaatcttggtcaattttctgcgctagagaaccaagagaagcacccactttggttgattgttttcgtgatcattggtaactcatttctcat |
188 |
Q |
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| T |
27243496 |
gatgcaaataaaatcttggtcaattttctgcgctagagaaccaagagaagcacccactttggttgatcgttttcgtgatcattggtaactcatttctcat |
27243595 |
T |
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| Q |
189 |
ttcctccnnnnnnnnnnnnnttatatgtaattgacttttcttgccccttgtgatttaatctgactttgcaattgatgaagatttaaagagttannnnnnn |
288 |
Q |
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| T |
27243596 |
ttcctccaaaaaaaaataa-ttacatgtaattgacttttcttgccccttttgatttaatctgactttgcaattgatgaagatttaaagagttctttttag |
27243694 |
T |
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| Q |
289 |
nnnnnnn-aacaatcaatgacaaagagttgaaaaaagacattctcttgcaggaagtcttggatccttggaacaatattcaccatacttctatcttttatt |
387 |
Q |
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| T |
27243695 |
ttttttttaacaatcaatgacaaagagttgaaaaaagacattctcttgcaggaagtcttggatccttggaacaatattcaccatacttctatcctttatt |
27243794 |
T |
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| Q |
388 |
actagagggaaatggggacctttgct |
413 |
Q |
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| T |
27243795 |
actagagggaaatggggacctttgct |
27243820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 27243417 - 27243465
Alignment:
| Q |
31 |
attccaaaattcaacatcacttctctgtttcacaacacagccatggatt |
79 |
Q |
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| T |
27243417 |
attccaaaatccaacatcacttctctgtttcacaacacaaccatggatt |
27243465 |
T |
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