View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10533_low_10 (Length: 202)
Name: NF10533_low_10
Description: NF10533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10533_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 3959022 - 3958843
Alignment:
| Q |
9 |
gtgagaagaaagatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttct |
108 |
Q |
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| T |
3959022 |
gtgaaaagaaagatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggacaaagacattattgacttactgataacacttct |
3958923 |
T |
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| Q |
109 |
atttggtggtcacgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaaga |
188 |
Q |
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| T |
3958922 |
atttggtggtcacgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaaga |
3958843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 129982 - 129815
Alignment:
| Q |
21 |
atttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttctatttggtggtca |
120 |
Q |
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| T |
129982 |
atttgttagacattattttggaaaccaaagacgaaaggggtgaaaaattggaggataaggacattattgacttactgatagcctttctatttggtgctca |
129883 |
T |
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| Q |
121 |
cgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaaga |
188 |
Q |
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| T |
129882 |
tgattcaattgcaactgcttctatgtggtcagttatgtatcttgcacaaaatccactttgtttgaaga |
129815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 149809 - 149641
Alignment:
| Q |
20 |
gatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttctatttggtggtc |
119 |
Q |
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| T |
149809 |
gatttgttagacattattttgcaaatcaaagacgaaagtggtgaaaaatttgaggataaggacattattgacttactgataacgtttctatttggtgctc |
149710 |
T |
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| Q |
120 |
acgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaaga |
188 |
Q |
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| T |
149709 |
atgaaacaatcgcaactaccattatgtggtcagttatgtatcttacacaaaatccactttgtttgaaga |
149641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 10306148 - 10306316
Alignment:
| Q |
20 |
gatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttctatttggtggtc |
119 |
Q |
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| T |
10306148 |
gatttgttagacaatcttttggaaatcaatgacgaaaggggtgaaaaatttgaagataaggatattgttgatttactcgtagcgttcctatttggtgctc |
10306247 |
T |
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| Q |
120 |
acgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaaga |
188 |
Q |
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| T |
10306248 |
atgatgcaattgcaactgctgttatgtggtcagttataaatcttacacaaaatccactttgtttgaaga |
10306316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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