View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10533_low_4 (Length: 251)
Name: NF10533_low_4
Description: NF10533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10533_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 51501429 - 51501653
Alignment:
| Q |
18 |
gctttaaggggacctataccggacgtgtttagcgaaacttcatatttcattaaccttgatttgtcgcggaacaatttgaacggtttaattcctaagtcga |
117 |
Q |
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| T |
51501429 |
gctttaaggggacctataccggacgtgtttagcgaaacttcatatttcattaaccttgatttgtcgcggaacaatttgaacggtttaattcctaagtcga |
51501528 |
T |
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| Q |
118 |
tggcattagctttgtacattggccatgtggactttagtcacaaccatctctttgggaaaattccagttgcttcttccttaagccatcttccgccggcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51501529 |
tggcattagctttgtacattggccatgtggactttagtcacaaccatctctttgggaaaattccggttgcttcttccttaagccatcttccgccggcatc |
51501628 |
T |
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| Q |
218 |
gtttgtatacaatcgacacctttgc |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
51501629 |
atttgtatacaatcgacacctttgc |
51501653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 24766164 - 24765940
Alignment:
| Q |
18 |
gctttaaggggacctataccggacgtgtttagcgaaacttcatatttcattaaccttgatttgtcgcggaacaatttgaacggtttaattcctaagtcga |
117 |
Q |
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||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
24766164 |
gctttaaggggtcctataccagacgtgtttagtgaaacttcatatttcatcaaccttgatttgtcgcggaacaatttgaacggtttaattcctaattcta |
24766065 |
T |
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| Q |
118 |
tggcattagctttgtacattggccatgtggactttagtcacaaccatctctttgggaaaattccagttgcttcttccttaagccatcttccgccggcatc |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |
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| T |
24766064 |
tggcaatagctttgtacattggccatgtggactttagtcacaaccatctctttgggaaaattccgattgcttcttccttaagccatcttcagcccgcatc |
24765965 |
T |
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| Q |
218 |
gtttgtatacaatcgacacctttgc |
242 |
Q |
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||||| ||||||||||||||||||| |
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| T |
24765964 |
gtttgcatacaatcgacacctttgc |
24765940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 24751115 - 24750914
Alignment:
| Q |
18 |
gctttaaggggacctataccggacgtgtttagcgaaacttcatatttcattaaccttgatttgtcgcggaacaatttgaacggtttaattcctaagtcga |
117 |
Q |
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|||||||||||||||| || ||| ||||| || ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |
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| T |
24751115 |
gctttaaggggacctacactggatgtgttcagtgaaacttcatatttcattaaccttgatctgccgcggaacaatttgaacggtttaattcctaagtcta |
24751016 |
T |
|
| Q |
118 |
tggcattagctttgtacattggccat--gtggactttagtcacaaccatctctttgggaaaattccagttgcttcttccttaagccatcttccgccggca |
215 |
Q |
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|||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||| | ||||||||||||||| ||||||| | ||||||| |
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| T |
24751015 |
tggcattagctttgtacatttttcatacatggactttactcacaaccgtctctttgggagaatttcggttgcttcttccttacgccatctacagccggca |
24750916 |
T |
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| Q |
216 |
tc |
217 |
Q |
| |
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|| |
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|
| T |
24750915 |
tc |
24750914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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