View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10533_low_5 (Length: 250)

Name: NF10533_low_5
Description: NF10533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10533_low_5
NF10533_low_5
[»] chr2 (11 HSPs)
chr2 (11-250)||(40016583-40016826)
chr2 (19-243)||(7702429-7702661)
chr2 (18-242)||(24479151-24479383)
chr2 (19-248)||(15513667-15513902)
chr2 (19-248)||(30267003-30267239)
chr2 (19-243)||(31342585-31342816)
chr2 (19-243)||(44920958-44921188)
chr2 (125-248)||(27151101-27151229)
chr2 (19-239)||(7718185-7718412)
chr2 (42-99)||(41573416-41573473)
chr2 (19-99)||(11017457-11017537)
[»] chr7 (12 HSPs)
chr7 (19-178)||(26621029-26621191)
chr7 (19-178)||(26608477-26608639)
chr7 (19-248)||(4685267-4685503)
chr7 (23-248)||(9242348-9242580)
chr7 (19-178)||(26619042-26619202)
chr7 (19-161)||(30089735-30089880)
chr7 (19-248)||(20277222-20277460)
chr7 (19-99)||(26205435-26205515)
chr7 (142-242)||(3374523-3374628)
chr7 (196-248)||(19746806-19746858)
chr7 (22-99)||(26224998-26225075)
chr7 (33-99)||(16086501-16086567)
[»] chr8 (16 HSPs)
chr8 (19-243)||(14997621-14997853)
chr8 (19-249)||(6801687-6801930)
chr8 (23-248)||(19369774-19370006)
chr8 (20-178)||(5650883-5651044)
chr8 (23-248)||(19448452-19448684)
chr8 (23-248)||(19532392-19532624)
chr8 (21-248)||(45355976-45356210)
chr8 (19-248)||(28248943-28249175)
chr8 (20-178)||(29345432-29345594)
chr8 (19-249)||(17634334-17634571)
chr8 (19-248)||(5528743-5528979)
chr8 (19-248)||(25638807-25639043)
chr8 (19-248)||(25637644-25637879)
chr8 (180-243)||(18767085-18767149)
chr8 (19-99)||(6403593-6403673)
chr8 (19-95)||(29553629-29553705)
[»] chr5 (15 HSPs)
chr5 (19-238)||(17037543-17037768)
chr5 (19-168)||(30786267-30786419)
chr5 (19-178)||(19984995-19985157)
chr5 (28-178)||(12042114-12042268)
chr5 (19-248)||(5078929-5079164)
chr5 (182-248)||(23616678-23616744)
chr5 (182-248)||(23848075-23848141)
chr5 (19-69)||(31571029-31571079)
chr5 (19-99)||(31068983-31069062)
chr5 (21-99)||(9333581-9333659)
chr5 (19-99)||(9354409-9354489)
chr5 (19-81)||(16411591-16411652)
chr5 (203-248)||(38449843-38449888)
chr5 (19-99)||(7410824-7410904)
chr5 (42-98)||(10869460-10869516)
[»] chr3 (12 HSPs)
chr3 (19-248)||(1627810-1628047)
chr3 (117-249)||(28745075-28745212)
chr3 (19-178)||(27259392-27259545)
chr3 (23-248)||(13845996-13846228)
chr3 (19-171)||(9633387-9633542)
chr3 (20-99)||(26707860-26707939)
chr3 (21-248)||(2550168-2550402)
chr3 (19-248)||(1654576-1654812)
chr3 (24-162)||(2943168-2943309)
chr3 (19-248)||(7407618-7407854)
chr3 (23-99)||(16457351-16457427)
chr3 (42-99)||(5498501-5498558)
[»] chr6 (17 HSPs)
chr6 (23-248)||(14669210-14669442)
chr6 (19-248)||(12591833-12592069)
chr6 (19-248)||(15361715-15361951)
chr6 (19-248)||(16734805-16735041)
chr6 (23-248)||(17719587-17719819)
chr6 (19-249)||(11936630-11936867)
chr6 (19-96)||(9631178-9631255)
chr6 (28-99)||(23264516-23264587)
chr6 (19-69)||(4591150-4591200)
chr6 (42-99)||(4485585-4485642)
chr6 (196-249)||(11948610-11948663)
chr6 (31-99)||(10935801-10935869)
chr6 (19-99)||(23904372-23904452)
chr6 (182-237)||(10070824-10070879)
chr6 (52-99)||(29667935-29667982)
chr6 (195-248)||(6684283-6684336)
chr6 (19-75)||(15690438-15690494)
[»] chr4 (11 HSPs)
chr4 (20-99)||(4881089-4881168)
chr4 (23-248)||(1684816-1685048)
chr4 (21-248)||(43600269-43600503)
chr4 (19-248)||(47065898-47066134)
chr4 (20-99)||(4904160-4904239)
chr4 (118-248)||(27739637-27739774)
chr4 (23-248)||(1152048-1152280)
chr4 (19-248)||(53300351-53300590)
chr4 (42-100)||(24559014-24559072)
chr4 (42-95)||(21539295-21539348)
chr4 (28-97)||(48464049-48464118)
[»] chr1 (12 HSPs)
chr1 (18-99)||(5911684-5911765)
chr1 (19-239)||(51758753-51758980)
chr1 (118-249)||(18308249-18308386)
chr1 (19-178)||(28636903-28637065)
chr1 (19-99)||(16222778-16222858)
chr1 (19-85)||(37097374-37097440)
chr1 (18-99)||(897454-897535)
chr1 (42-99)||(3399645-3399702)
chr1 (42-99)||(12189975-12190032)
chr1 (19-99)||(15214327-15214407)
chr1 (52-99)||(1843985-1844032)
chr1 (28-99)||(13208621-13208692)
[»] scaffold0576 (1 HSPs)
scaffold0576 (19-248)||(6699-6935)
[»] scaffold0069 (1 HSPs)
scaffold0069 (26-248)||(40562-40791)
[»] scaffold0684 (1 HSPs)
scaffold0684 (23-248)||(611-843)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 40016583 - 40016826
Alignment:
Q  11 cataggcatagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctatta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||   ||||||||    
T  40016583 cataggcatagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctatta 40016682  T
Q  108 ctaaaaagattttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataatttttagtatcatcagtaacaataaa 206  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  40016683 ctaaagagattttaattacattttattgtattatctgtaacattcaaaaagtatcgtaaaatgttacattataatttttagcatcatcagtaacaataaa 40016782  T
Q  207 agaatgttacatttataattttcgagaagttgtaaaatgtgtta 250  Q
    | ||| |||||||||||||||||||||| ||||||||| |||||    
T  40016783 aaaatattacatttataattttcgagaaattgtaaaatatgtta 40016826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 7702429 - 7702661
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    ||||||||| |||||||||||| ||||| ||  ||||||||| | ||||||  ||||| |||||| | |||||||||||||   || |||||||||| ||    
T  7702429 tagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaagag 7702528  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaaga 209  Q
      |||| ||||||||| | ||||| ||||||||||| ||||| ||||||||||||||||||||| ||     |||| ||||||   |||||| |||||      
T  7702529 -ctttagttacattttgtagtattatctgtaacatttaaaaattgtcgtaaaatgttacattattataacactttttgtatcactcgtaacactaaaaag 7702627  T
Q  210 atgttacatttataattttcgagaagttgtaaaa 243  Q
     | |||||||||||||||| ||||||||||||||    
T  7702628 ttattacatttataatttttgagaagttgtaaaa 7702661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 24479151 - 24479383
Alignment:
Q  18 atagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaa 114  Q
    ||||||||||||||||||||||| |||||||||  || ||||||| ||||||| ||||| |||||||| |||| ||||||||    | | |||||||| |    
T  24479151 atagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaaga 24479250  T
Q  115 gattttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaag 208  Q
    |  |||| ||| ||||||| ||||| ||| |||||||||||||||||||||||| |||||| |||      |||||| ||| || || ||||||| |||     
T  24479251 g-ctttagttatattttatagtattatctataacattcaaaaagtgtcgtaaaaggttacactattgtaacattttttgtaccaccattaacaattaaaa 24479349  T
Q  209 aatgttacatttataattttcgagaagttgtaaa 242  Q
    ||| |||||||||| |||||   |||||||||||    
T  24479350 aattttacatttatcatttttatgaagttgtaaa 24479383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 15513667 - 15513902
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaacccta---ttactaaaaag 115  Q
    |||||||| || |||||| | | ||||||||| |||||||||||  |||||| | ||| || ||||| |||||||||||||  ||    |||||||||||    
T  15513667 tagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaag 15513766  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaaga 209  Q
    |||| | ||||||||||| ||| | |||||| || ||||||||||||| ||  ||||||||||| |      |||| ||||||  ||||||||| ||| |    
T  15513767 attt-agttacattttatagtactatctgtatcaatcaaaaagtgtcgcaa--tgttacattattagaacactttttgtatcactagtaacaattaaaaa 15513863  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||| ||||||||||| |||||||||||||| ||||    
T  15513864 gtgttacgtttataatttttgagaagttgtaaaaagtgt 15513902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 30267003 - 30267239
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||| | ||||||| ||||| ||  |||| |||||||||||||   || | |||| ||| ||    
T  30267003 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagag 30267102  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | || |||||| |||||||||||||  |||||||||| |||      | |||| |||| |  ||||||||||||| |    
T  30267103 -ttttagttacattttatagtactatccgtaacaatcaaaaagtgtcg-caaatgttacactattgtaacactttttgtataactagtaacaataaaaaa 30267200  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||| |||  ||||||||||||| ||||    
T  30267201 gtgttacatttataaattttaagaagttgtaaaaagtgt 30267239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 31342816 - 31342585
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| ||||||||| |||   || | ||||||||  |    
T  31342816 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg 31342717  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| ||||||||||| |  ||||| ||| ||||      | |||| ||||||   |||||||||||| |    
T  31342716 -ttttagttacattttatagtactatctgtaacaatcaaaaagtgttg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 31342619  T
Q  210 atgttacatttataattttcgagaagttgtaaaa 243  Q
     |||||||||||||||||| ||| ||||||||||    
T  31342618 gtgttacatttataatttttgaggagttgtaaaa 31342585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 44920958 - 44921188
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaacccta---ttactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||  ||||||||||| ||||||| ||||| ||  | || |||||||||||||  ||    |||||||| ||    
T  44920958 tagtaacacttgaaaattgtaactaaatcaaa-aaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagag 44921056  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | || |||||| | ||||| ||||| ||| ||||||| |||  |     |||| ||||||  ||||||||||||| |    
T  44921057 -ttttagttacattttatagtactatccgtaacaataaaaaaatgtcgcaaa-tgttacactattgtaacactttttgtatcactagtaacaataaaaaa 44921154  T
Q  210 atgttacatttataattttcgagaagttgtaaaa 243  Q
     |||||||||||||||||| ||||||||||||||    
T  44921155 gtgttacatttataatttttgagaagttgtaaaa 44921188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 27151229 - 27151101
Alignment:
Q  125 acattttattgtatttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaat-aaaagaatgttacat 218  Q
    ||||||||| ||||| |||||| |||||||| ||||||||||||||||| ||||      | |||| |||||| | |||||| | |||| ||| ||||||    
T  27151229 acattttatagtatt-ctgtaaaattcaaaatgtgtcgtaaaatgttaccttattgtaacactttttgtatcaccggtaacactaaaaaaaatattacat 27151131  T
Q  219 ttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||  ||||||||||||| ||||    
T  27151130 ttataatttttaagaagttgtaaaaagtgt 27151101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 7718185 - 7718412
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||| ||||||||||| | | ||||||||| ||||| ||||| ||||||| ||||| ||  |||| ||||||||| |||   || | |||||||| ||    
T  7718185 tagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagag 7718284  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatca-tcagtaacaataaaag 208  Q
     ||||||||||||||||| ||| | || |||| | | ||||| |||||  ||||||| ||||||      | |||| |||||| | | |||||||||||     
T  7718285 -ttttaattacattttatagtactatccgtaataataaaaaaatgtcg-caaatgttgcattattgtaacactttttgtatcacttaataacaataaaa- 7718381  T
Q  209 aatgttacatttataattttcgagaagttgt 239  Q
    |||||||||||||||||||| ||||||||||    
T  7718382 aatgttacatttataatttttgagaagttgt 7718412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 41573416 - 41573473
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||| ||||||||||| ||||||| ||||| || || || |||||||||||||    
T  41573416 taaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaa 41573473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 11017457 - 11017537
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||||| |||||||   ||| ||||| ||| ||| ||||||| ||||||| ||||| |||||||  |||||||||||||    
T  11017457 tagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaa 11017537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 26621191 - 26621029
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| ||| ||||| ||| ||||||||||||||||||| ||| | ||||| || ||||||||| |||   || | |||||||| ||    
T  26621191 tagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagag 26621092  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
     ||| | ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  26621091 cttt-agttacattttatagtattatctgtaacattcaaaaagtgtcataaaatgttacattat 26621029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 26608639 - 26608477
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||| ||||||||| |||| |||||||| ||||||||||||||||||| ||||| |||||||| ||||||||| |||   || | |||||||| ||    
T  26608639 tagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagag 26608540  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
      |||| || |||||||| ||| | ||| ||||| ||||||||||||| |||||||||||||||    
T  26608539 -ctttagttgcattttatagtactatctataacaatcaaaaagtgtcgcaaaatgttacattat 26608477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 4685503 - 4685267
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||| | ||||||| ||| | || ||||| |||||||||||||   || ||||||||||  |    
T  4685503 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaagtg 4685404  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| |    
T  4685403 -ttttagttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 4685306  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  4685305 gtgttacatttataatttttgaggagttgtaaaaagtgt 4685267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 9242580 - 9242348
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||| ||||||| ||||||| | ||| || ||||| ||||||||| |||   || | |||||||| || |||    
T  9242580 aacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagag-ttt 9242482  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||||||||| ||||| ||| ||||| | |||||||||||  ||||||||||||||      | |||| ||||||  | ||||||| ||| | |||    
T  9242481 tagttacattttatagtattatctataacaattaaaaagtgtcg-caaatgttacattattgtaacactttttgtatcactattaacaatgaaaaagtgt 9242383  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  9242382 tacatttataatttttgagaagttgtaaaaagtgt 9242348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 26619202 - 26619042
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggt-aacccta--ttactaaaaag 115  Q
    ||||||||||||||| || ||| ||||||||| ||||||||||||||||||| || || |||||||| ||||| ||||| || ||||  |||||||| |     
T  26619202 tagtaacacttgaaa-ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctatgttactaaaga- 26619106  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
    | |||| |||||||| || ||||| | ||||||||||||||||||||| |||||| ||||||||    
T  26619105 actttagttacatttgatagtattatttgtaacattcaaaaagtgtcgcaaaatgctacattat 26619042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 30089735 - 30089880
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||| | ||| ||||||||| |||||||||||||||| || ||||| |||||||| |||||||||| ||   || | |||||||| ||    
T  30089735 tagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagag 30089834  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtc 161  Q
      |||| ||||||||||| ||||| | | ||||||||||||||||||    
T  30089835 -ctttagttacattttatagtattatttttaacattcaaaaagtgtc 30089880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 20277460 - 20277222
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac---cctattactaaaaag 115  Q
    |||||||||| ||||||| | | ||||||||  ||||| ||| | ||||||| ||||| ||||| || |||||||||||||    ||| |||||||| ||    
T  20277460 tagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagag 20277361  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaag-tgtcgtaaaatgttacattata-----atttttagtatcatcagtaacaataaaag 208  Q
     ||| | ||||||| ||| ||||| ||||||||| | |||||  ||| | ||||||||| |||||      | |||| |||||| || |||| ||||||     
T  20277360 cttt-agttacattatatagtattatctgtaacaataaaaaaaatgtagcaaaatgttatattattgaaacactttttgtatcaccaataacgataaaaa 20277262  T
Q  209 aatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  20277261 aatgttacatttataatttttgagaagttgtaaaaagtgt 20277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 26205515 - 26205435
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||| ||||||||||||||| | ||||||||| ||||||||||| ||||||| ||||| || ||||| ||||| |||||||    
T  26205515 tagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaa 26205435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 3374523 - 3374628
Alignment:
Q  142 tgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagt 236  Q
    ||||||||||||||||| ||| ||||| | |||||||  |     |||| |||||| |||||||||||||| | ||||||||||||||||||  ||||||    
T  3374523 tgtaacattcaaaaagtatcgcaaaatatcacattattgtaacactttttgtatcaccagtaacaataaaaaagtgttacatttataattttttagaagt 3374622  T
Q  237 tgtaaa 242  Q
    ||||||    
T  3374623 tgtaaa 3374628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 19746806 - 19746858
Alignment:
Q  196 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||||||||||| | |||||||||||||||||| |||||||||||||| ||||    
T  19746806 gtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgt 19746858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 26225075 - 26224998
Alignment:
Q  22 taacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||||||| | | ||||||||| |||||| |||| ||||||| ||||| || ||||| |||| ||||||||    
T  26225075 taacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaa 26224998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 16086501 - 16086567
Alignment:
Q  33 aattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||| |||||||||||   ||| ||||||| ||||||| || || ||||||||||||||||||||||    
T  16086501 aattgttattaaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaa 16086567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 14997621 - 14997853
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||| ||||||||||||||||| ||| ||||| |||||||||||| |||||  ||||| |||||| | |||||||||||||   || | |||||||| ||    
T  14997621 tagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagag 14997720  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
      |||| |||| |||||| |||||  |||||||||||||||| ||||| ||||  |||||||||      | |||| |||||| | |||||| ||||| |    
T  14997721 -ctttagttaccttttatagtattaactgtaacattcaaaaaatgtcgcaaaacattacattattgtaacactttttgtatcaccggtaacactaaaaaa 14997819  T
Q  210 atgttacatttataattttcgagaagttgtaaaa 243  Q
    ||||||||||||||||||| || |||||||||||    
T  14997820 atgttacatttataatttttgataagttgtaaaa 14997853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 6801930 - 6801687
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||| ||||| ||||||||  ||||||||||| ||||||| ||||| || ||||| |||||||||||||   |||| |||||||| ||    
T  6801930 tagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagag 6801831  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaag-----tgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaata 204  Q
     ||||| ||||||||||  |||||  |||||||||| ||||||     ||||| |||||||||||||||      | |||| |||||||||||||| |||    
T  6801830 -ttttagttacattttagagtattagctgtaacattaaaaaagtgtactgtcgcaaaatgttacattattgtaacactttttgtatcatcagtaaccata 6801732  T
Q  205 aaagaatgttacatttataattttcgagaagttgtaaaatgtgtt 249  Q
    ||  |||||||||||||| ||||| | ||| | |||||| |||||    
T  6801731 aagaaatgttacatttatcatttttgcgaattagtaaaaagtgtt 6801687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 19370006 - 19369774
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||    
T  19370006 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-ttt 19369908  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||||||||| ||||| ||||||||| | ||||||||||| ||| |||||||||||  |     |||| ||||||  ||||||||||||| | |||    
T  19369907 tagttacattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgt 19369809  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  19369808 tacatttataatttttgagaagttgtaaaaagtgt 19369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 5651044 - 5650883
Alignment:
Q  20 agtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaaga 116  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||| | |||||||| |||||||||||||   || | |||| ||||||     
T  5651044 agtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaacccttgttacaaaaaag- 5650946  T
Q  117 ttttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
     |||| || |||||||| ||||| ||| ||||||||||| ||||||  |||||||||||||||    
T  5650945 ctttagttgcattttatggtattatctataacattcaaatagtgtcacaaaatgttacattat 5650883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 19448452 - 19448684
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||    
T  19448452 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-ttt 19448550  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||| ||||||| ||||| ||||||||| | ||||||||||| ||| |||||||||||  |     |||| ||||||  ||||||||||||| | |||    
T  19448551 tagttatattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgt 19448649  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  19448650 tacatttataatttttgagaagttgtaaaaagtgt 19448684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 19532624 - 19532392
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||    
T  19532624 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-ttt 19532526  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||| ||||||| ||||| ||||||||| | ||||||||||| ||| |||||||||||  |     |||| ||||||  ||||||||||||| | |||    
T  19532525 tagttatattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgt 19532427  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  19532426 tacatttataatttttgagaagttgtaaaaagtgt 19532392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 45356210 - 45355976
Alignment:
Q  21 gtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagat 117  Q
    |||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | |    
T  45356210 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-t 45356112  T
Q  118 tttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaat 211  Q
    |||| ||||||||||| ||| | ||||||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| | |    
T  45356111 tttagttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagt 45356013  T
Q  212 gttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||||| ||| |||||||||| ||||    
T  45356012 gttacatttataatttttgaggagttgtaaaaagtgt 45355976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 28249175 - 28248943
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  |    
T  28249175 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 28249076  T
Q  116 attttaattacattttattgtatttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaa 210  Q
     ||||| ||||||||||| |||   |||||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| |     
T  28249075 -ttttagttacattttatagta---ctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaag 28248981  T
Q  211 tgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||||||||||||||||| ||| |||||||||| ||||    
T  28248980 tgttacatttataatttttgaggagttgtaaaaagtgt 28248943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 29345432 - 29345594
Alignment:
Q  20 agtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaaga 116  Q
    ||||||||| ||||||| | | ||||||||| ||||| ||||| ||||||| ||||| | |||||| |||||||||||||   |||| |||||||| | |    
T  29345432 agtaacactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaacaaa 29345531  T
Q  117 ttttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
     |||| ||||||||||| ||||| | ||||||| ||| || |||| | |||||||||||||||    
T  29345532 ctttagttacattttatagtattatttgtaacaatcagaatgtgttgcaaaatgttacattat 29345594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 17634571 - 17634334
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||| ||||||||| | | ||||||||| ||||||||||| ||||||| || || || ||||| ||||| |||||||   || | |||||||| |     
T  17634571 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaaga- 17634473  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
    | |||| ||||||||||| ||| | ||||||||| |||||||||||||  |||| |||||||||      | |||  |||||| || ||||||||||  |    
T  17634472 aatttagttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatattacattattgtaacactttatgtatcaccaataacaataaataa 17634374  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgtt 249  Q
    ||||| ||||||| ||||| |||||||||||||| |||||    
T  17634373 atgttgcatttatcatttttgagaagttgtaaaaagtgtt 17634334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 5528743 - 5528979
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || |  || ||||||||| |||   |  | |||||||| ||    
T  5528743 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagag 5528842  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||  ||||| ||||||||| | ||||||||||| ||| | | |||||||  |     |||| ||||||| ||||||||||||| |    
T  5528843 -ttttagttacattttacagtattatctgtaacagttaaaaagtgtcgcaaa-tataacattattgtaacactttttgtatcattagtaacaataaaaaa 5528940  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     ||||||| |||||||||| |||||||||||||| ||||    
T  5528941 gtgttacaattataatttttgagaagttgtaaaaagtgt 5528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 25638807 - 25639043
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  |    
T  25638807 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtg 25638906  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | || |||||| ||||||| |||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| |    
T  25638907 -ttttagttacattttatagtactatccgtaacaatcaaaaaatgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 25639004  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  25639005 gtgttacatttataatttttgaggagttgtaaaaagtgt 25639043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 25637644 - 25637879
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||| ||| ||| ||||||| ||||||| ||| | || | ||| |||||||||||||   || | |||||||| |     
T  25637644 tagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaaga- 25637742  T
Q  116 attttaattacattttattgtatttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaa 210  Q
    |||||| ||||||||||| |||||  ||||||| | ||||||||| |  ||||| ||||||||      | |||| ||||||  ||||||||||  | |     
T  25637743 attttagttacattttatagtattattgtaacaattaaaaagtgttg-caaatgctacattattgtaacactttttgtatcactagtaacaatactaaag 25637841  T
Q  211 tgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  25637842 tgttacatttataatttttgagaagttgtaaaaagtgt 25637879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 18767085 - 18767149
Alignment:
Q  180 atttttagtatcatcagtaacaataaaagaa-tgttacatttataattttcgagaagttgtaaaa 243  Q
    |||||| ||||||  ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  18767085 attttttgtatcactagtaacaataaaaaaagtgttacatttataatttttgagaagttgtaaaa 18767149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 6403593 - 6403673
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||||| |||||| || | | ||||| ||| ||||||||||| ||||||| ||||| |||||||  |||||||||||||    
T  6403593 tagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 6403673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 29553629 - 29553705
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttag 95  Q
    |||||||| ||||||||| | |  |||||||| ||||||||||| ||||||| ||| | |||||||  |||||||||    
T  29553629 tagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttag 29553705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 17037543 - 17037768
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||  | | ||||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||   |  | |||||||| ||    
T  17037543 tagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagag 17037642  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||||||||||||      | |||| ||||||  ||||||||||||| |    
T  17037643 -ttttagttacattttatagtattatctgtaacaattaaaaagtgtcg-caaatgttacattattgtaacactttttgtatcactagtaacaataaaa-a 17037739  T
Q  210 atgttacatttataattttcgagaagttg 238  Q
     ||||||||||||||||||  ||||||||    
T  17037740 gtgttacatttataatttttaagaagttg 17037768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 30786267 - 30786419
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | | ||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||   || | |||||||||||    
T  30786267 tagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaag 30786366  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaat 168  Q
    | |||| | |||||||||  |||| | ||||||| | ||||||||||| |||||    
T  30786367 a-tttagtcacattttatgttattatttgtaacaataaaaaagtgtcgcaaaat 30786419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 19984995 - 19985157
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||| ||||||  | | ||||||||| ||||||||||| |||| || ||||| ||||||||||||||||||||||   ||   |||||||| ||    
T  19984995 tagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagag 19985094  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
     ||||| ||||||||||| ||||| | ||||| | ||||||||||| | |||||||||||||||    
T  19985095 -ttttagttacattttatagtattatatgtaataatcaaaaagtgttgcaaaatgttacattat 19985157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 12042268 - 12042114
Alignment:
Q  28 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac----cctattactaaaaagattttaat 123  Q
    ||||||||| | | ||||||||| ||||||||||||||| ||| ||||| |||||||| |||||||||||||     |||||||||||| || ||||| |    
T  12042268 ttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaagaaacctattactaaagag-ttttagt 12042170  T
Q  124 tacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
    ||||||||||  |||| | ||||| | | ||||||||||| |||||| ||||||||    
T  12042169 tacattttatattattatttgtaataataaaaaagtgtcgcaaaatgatacattat 12042114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 5079164 - 5078929
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  |    
T  5079164 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 5079065  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| ||||||||||| |  ||||| ||| ||||      | |||| ||||||   |||||||||||| |    
T  5079064 -ttttagttacattttatagtactatctgtaacaatcaaaaagtgttg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 5078967  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  5078966 gtgttacatttataatttt-gaggagttgtaaaaagtgt 5078929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 23616744 - 23616678
Alignment:
Q  182 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||    
T  23616744 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgt 23616678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 23848141 - 23848075
Alignment:
Q  182 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||    
T  23848141 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgt 23848075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 31571029 - 31571079
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaa 69  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  31571029 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaa 31571079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 31069062 - 31068983
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||| |||||| | | ||||||||| ||||||||||| ||||||| ||||| || ||||| |||||||||||||    
T  31069062 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaa 31068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 9333659 - 9333581
Alignment:
Q  21 gtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||| ||||||||| | |  |||||||| ||||||||||| ||||||| ||||| |||||||  |||||||||||||    
T  9333659 gtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 9333581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 9354489 - 9354409
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||||| ||||||||| | | | ||||||| ||||||||||| ||||||| || || |||||||  |||||||||||||    
T  9354489 tagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaa 9354409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 16411591 - 16411652
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatt 81  Q
    |||||||| |||||||| |||| ||||||| | |||||||||||||||| |||||||| ||||    
T  16411591 tagtaacatttgaaaat-attactaaatcacgaaaaatgttactgattatatctagtaacatt 16411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 38449888 - 38449843
Alignment:
Q  203 taaaagaatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||| |||||| ||||||||||||| |||||||||||||| ||||    
T  38449888 taaaaaaatgtttcatttataatttttgagaagttgtaaaaagtgt 38449843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 7410824 - 7410904
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||||| || |||||| | | ||||||||  ||||||||||| ||||||| ||| | || ||||| |||||||||||||    
T  7410824 tagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaa 7410904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 10869460 - 10869516
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggta 98  Q
    ||||||| | ||| ||||||| ||||||| ||||| |||||||| ||||||||||||    
T  10869460 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 1628047 - 1627810
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||| ||||| ||||||| ||||| || ||||| |||||||| ||||   || | |||| ||| ||    
T  1628047 tagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagag 1627948  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacatta----taat--ttttagtatcatcagtaacaataaaag 208  Q
     ||||| ||||||||||| ||||| | ||||||| | |||||||||||  |||||||||||||    ||||  ||||  |||||  |||||||||||||     
T  1627947 -ttttagttacattttatagtattatatgtaacaattaaaaagtgtcg-caaatgttacattatttgtaatactttttatatcactagtaacaataaaaa 1627850  T
Q  209 aatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    | ||||||||||||||||||  ||||||||||||| ||||    
T  1627849 agtgttacatttataattttttagaagttgtaaaaagtgt 1627810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 28745075 - 28745212
Alignment:
Q  117 ttttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaa 210  Q
    ||||| ||||||||||  ||||| | ||||||||||||||||||||| ||||| |||||||||  |     |||| ||||||||||||||||||||| ||    
T  28745075 ttttagttacattttagagtattatttgtaacattcaaaaagtgtcgcaaaattttacattattgtaacactttttgtatcatcagtaacaataaaa-aa 28745173  T
Q  211 tgttacatttataattttcgagaagttgtaaaatgtgtt 249  Q
    |||||||||||| ||||| ||||| |||||||| |||||    
T  28745174 tgttacatttatcatttttgagaatttgtaaaaagtgtt 28745212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 27259545 - 27259392
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccctattactaaaaagatt 118  Q
    |||||||| ||||||| ||||| ||||||||| ||||||||||| ||||||| ||||| |||||||| ||||      |  |  | |||||||| || ||    
T  27259545 tagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt------tccctttgttactaaagagctt 27259452  T
Q  119 ttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
    | | ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  27259451 t-agttacattttagagtattatctgtaacattcaaaaagtgtcgtaaaatgttacattat 27259392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 13845996 - 13846228
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | |||    
T  13845996 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-ttt 13846094  T
Q  120 taattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||||||||| ||| | ||||||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| | |||    
T  13846095 tagttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagtgt 13846193  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| ||| |||||||||| ||||    
T  13846194 tacatttataatttttgaggagttgtaaaaagtgt 13846228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 9633542 - 9633387
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||| ||||| |||||| |  ||||||||||| ||||||| ||||  ||||| || |||||||||||||   |||| |||||||| ||    
T  9633542 tagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagag 9633443  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgtt 171  Q
     ||||| ||||||||||  | ||| | ||||||||||||||| ||||| ||||||||    
T  9633442 -ttttagttacattttagagcattatatgtaacattcaaaaaatgtcgcaaaatgtt 9633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 26707860 - 26707939
Alignment:
Q  20 agtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||| ||||||||  ||| ||||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  26707860 agtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaa 26707939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 2550168 - 2550402
Alignment:
Q  21 gtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagat 117  Q
    |||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   |  | ||||||||  | |    
T  2550168 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtg-t 2550266  T
Q  118 tttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaat 211  Q
    |||| ||||||||||| ||| | | ||||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| | |    
T  2550267 tttagttacattttatagtactatttgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagt 2550365  T
Q  212 gttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||||| ||| |||||||||| ||||    
T  2550366 gttacatttataatttttgaggagttgtaaaaagtgt 2550402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 1654576 - 1654812
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||| ||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||| ||||   |  | ||| ||||  |    
T  1654576 tagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtg 1654675  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| |||||||||||||  ||||| ||| ||||      |||||| ||||||   |||||||||||| |    
T  1654676 -ttttagttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacattttttgtatcacttgtaacaataaaaaa 1654773  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  1654774 gtgttacatttataatttttgaggagttgtaaaaagtgt 1654812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 2943309 - 2943168
Alignment:
Q  24 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 120  Q
    |||||||||| || | ||||||||||| ||||||||||| ||||||| ||||| |||| ||| ||||||||||| |   || | ||||||||  | ||||    
T  2943309 acacttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtg-tttt 2943211  T
Q  121 aattacattttattgtatt-tctgtaacattcaaaaagtgtcg 162  Q
    | ||||||||||| ||||| ||||||||| | |||||||||||    
T  2943210 agttacattttatagtattatctgtaacaattaaaaagtgtcg 2943168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 7407854 - 7407618
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  |    
T  7407854 tagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 7407755  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | || |||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| |    
T  7407754 -ttttagttacattttatagtactatcagtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 7407657  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     ||||||||||||||||||  || |||||||||| ||||    
T  7407656 gtgttacatttataatttttaaggagttgtaaaaagtgt 7407618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 16457427 - 16457351
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||| ||||||||| | | ||||||||| ||||||||||| ||||||| ||||| |||||||  |||||||||||||    
T  16457427 aacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 16457351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 5498501 - 5498558
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||| ||||||||||| ||||||| ||||| | | |||| |||||||||||||    
T  5498501 taaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaa 5498558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 14669442 - 14669210
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | |||||||||||||||||   || | |||||||| || |||    
T  14669442 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagag-ttt 14669344  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||||||||| ||||| | ||||||| | ||||||||||   ||||||||||||||      | |||| ||||||  ||||||||||||| | |||    
T  14669343 tagttacattttatagtattatttgtaacaattaaaaagtgtc-acaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgt 14669245  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| ||||||| |||||| ||||    
T  14669244 tacatttataatttttgagaagtcgtaaaaagtgt 14669210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 12591833 - 12592069
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||| | ||||||| ||||| |  | ||| |||||||||||||   || | |||||||| ||    
T  12591833 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagag 12591932  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||| ||||| ||||| ||||||||| | |||||||||||  ||||||||||||||      | |||| ||||||  ||| ||||||||| |    
T  12591933 -ttttagttacaatttatagtattatctgtaacaattaaaaagtgtcg-caaatgttacattattgtaacactttttgtatcactagtcacaataaaaaa 12592030  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     ||||||  |||||||||| |||||||||||||| ||||    
T  12592031 gtgttactattataatttttgagaagttgtaaaaagtgt 12592069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 15361715 - 15361951
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    ||||||||||| |||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   |  | ||||||||| |    
T  15361715 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatg 15361814  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| ||||||||||| |  ||||| ||| ||||     || |||| ||||||   |||||||||||| |    
T  15361815 -ttttagttacattttatagtactatctgtaacaatcaaaaagtgttg-caaatggtaccttattgtaaaactttttgtatcacttgtaacaataaaaaa 15361912  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  15361913 gtgttacatttataatttttgaggagttgtaaaaagtgt 15361951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 16734805 - 16735041
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | |||||||| |||||||||||||   || | ||||||||  |    
T  16734805 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtg 16734904  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| ||||||||| |||  ||||| ||| ||||      | |||  ||||||   |||||||||||| |    
T  16734905 -ttttagttacattttatagtactatctgtaacaatcaaaaagtatcg-caaatggtaccttattgtaacactttctgtatcacttgtaacaataaaaaa 16735002  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  16735003 gtgttacatttataatttttgaggagttgtaaaaagtgt 16735041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 17719819 - 17719587
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||| | | | | || | ||| ||||||||| |||   || | |||||||| || |||    
T  17719819 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-ttt 17719721  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||| ||||| ||||| ||||||||| | ||||||||||| ||| |||||||||||  |     |||| ||||||  ||||||||||||| | |||    
T  17719720 tagttacaatttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgt 17719622  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  17719621 tacatttataatttttgagaagttgtaaaaagtgt 17719587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 11936867 - 11936630
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| ||||||||| |||   || | ||||||||  |    
T  11936867 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg 11936768  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| | ||||| |||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| |    
T  11936767 -ttttagttacattttatagtactatctgtaacaataaaaaaatgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaa 11936670  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgtt 249  Q
     |||||||||||||||||| ||| |||||||||| |||||    
T  11936669 gtgttacatttataatttttgaggagttgtaaaaagtgtt 11936630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 9631255 - 9631178
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttagg 96  Q
    |||||||||||||||| ||||| ||||||||| | || |||||| | ||||| ||||| |||||||| ||||||||||    
T  9631255 tagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttagg 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 23264587 - 23264516
Alignment:
Q  28 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||| ||| ||||||||| ||| ||||||| ||||||| ||||| |||| ||| |||||||||||||    
T  23264587 ttgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaa 23264516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 4591150 - 4591200
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaa 69  Q
    |||||||| ||||||||||||| ||||||||| |||||||||| |||||||    
T  4591150 tagtaacatttgaaaattattactaaatcaagaaaaatgttaccgattaaa 4591200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 4485642 - 4485585
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||| |||||| |||| ||||||| |||||  |||||||||||||||||||||    
T  4485642 taaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaa 4485585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 11948663 - 11948610
Alignment:
Q  196 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgtt 249  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| |||||    
T  11948663 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtt 11948610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 10935869 - 10935801
Alignment:
Q  31 aaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||| ||||| ||||||| | ||||||||||| |||| ||| |||| |||||||| |||||||||||||    
T  10935869 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaa 10935801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 23904452 - 23904372
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||||||||||  || ||||| ||| |||| |||||| | | ||| ||||| |||||||| |||||||||||||    
T  23904452 tagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaa 23904372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 10070824 - 10070879
Alignment:
Q  182 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagtt 237  Q
    |||| ||||||| ||||||||||||| | |||||||||||||||||| || |||||    
T  10070824 tttttgtatcattagtaacaataaaaaagtgttacatttataatttttgaaaagtt 10070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 29667982 - 29667935
Alignment:
Q  52 aaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  29667982 aaaatgttactaattaaatttagtaacatttgaacaattgttaggtaa 29667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 6684283 - 6684336
Alignment:
Q  195 agtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||| | |||||| ||||||| ||| |||||||||||||| ||||    
T  6684283 agtaacaataaaatagtgttacgtttataaattttgagaagttgtaaaaagtgt 6684336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 15690438 - 15690494
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagt 75  Q
    |||||||| ||||||||| | | ||||||||| ||||||||||| ||||||| ||||    
T  15690438 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagt 15690494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 4881168 - 4881089
Alignment:
Q  20 agtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||    
T  4881168 agtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaa 4881089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 1685048 - 1684816
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||    
T  1685048 aacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-ttt 1684950  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||| ||||| ||||| ||||||||| | ||||||||||| ||| ||||||| |||  |     |||| ||||||  ||||||||||||| | |||    
T  1684949 tagttacaatttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacaatattgtaacactttttgtatcactagtaacaataaaaaagtgt 1684851  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  1684850 tacatttataatttttgagaagttgtaaaaagtgt 1684816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 43600269 - 43600503
Alignment:
Q  21 gtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagat 117  Q
    |||||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| |  | ||||| |||||||||||||   || | ||||||||  | |    
T  43600269 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtg-t 43600367  T
Q  118 tttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaat 211  Q
    |||| ||||||||||| ||| | ||||||||| |||||||||||||  ||||| ||| ||||      | |||| ||||||   |||||||||||| | |    
T  43600368 tttagttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaataaaaaagt 43600466  T
Q  212 gttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||||| ||| |||||||||| ||||    
T  43600467 gttacatttataatttttgaggagttgtaaaaagtgt 43600503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 47066134 - 47065898
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | | ||||||||| ||||||||| | ||||||| ||||| ||  |||| |||||||||||||   || | |||| ||| ||    
T  47066134 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagag 47066035  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | || |||||| |||||||||||||  |||||||||| |||      | |||| |||| |  ||||||||||||| |    
T  47066034 -ttttagttacattttatagtactatccgtaacaatcaaaaagtgtcg-caaatgttacactattgtaacactttttgtataactagtaacaataaaaaa 47065937  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||| |||  ||||||||||||| ||||    
T  47065936 gtgttacatttataaattttaagaagttgtaaaaagtgt 47065898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 4904239 - 4904160
Alignment:
Q  20 agtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||||||| |||||| ||| ||||||| | ||||||||||||||||||| ||||| |||||| | |||||||||||||    
T  4904239 agtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaa 4904160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 27739774 - 27739637
Alignment:
Q  118 tttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaa-tgttacattata-----atttttagtatcatcagtaacaataaaagaa 210  Q
    |||| ||||||||||| ||||| ||||||| | ||||||||||||| |||| | |||||||||      |||||| ||||||  | ||||||||||| ||    
T  27739774 tttagttacattttatagtattatctgtaagaatcaaaaagtgtcgaaaaacttttacattattgtaacattttttgtatcaatactaacaataaaaaaa 27739675  T
Q  211 tgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    |||||||||||||||||| ||| |||||||||| ||||    
T  27739674 tgttacatttataatttttgaggagttgtaaaaagtgt 27739637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 1152048 - 1152280
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||| ||| ||||||||||| ||||||| | | | || |  || ||||||||| |||   || | |||||||| || |||    
T  1152048 aacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaagag-ttt 1152146  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||| |||||  |||| ||||||||| | |||||||||| | ||||||||||||||  |     |||| ||||||  ||||||||||||| | |||    
T  1152147 tagttacagtttataatattatctgtaacaattaaaaagtgtc-tcaaatgttacattattgtaacactttttgtatcactagtaacaataaaaaagtgt 1152245  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| |||||||||||||| ||||    
T  1152246 tacatttataatttttgagaagttgtaaaaagtgt 1152280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 53300351 - 53300590
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||||||||||||| | ||||||||||| ||||||||| | ||||||| ||||| ||  | || |||||||||||||   || | |||| ||| ||    
T  53300351 tagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagag 53300450  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttaca------ttataat--ttttagtatcatcagtaacaataaa 206  Q
     ||||| ||||||||||| ||| | || |||||| ||||||||||||| ||| |||||||      || |||   |||| |||| |  ||||||||||||    
T  53300451 -ttttagttacattttatcgtactatccgtaacaatcaaaaagtgtcgcaaa-tgttacaacactattgtaacactttttgtataactagtaacaataaa 53300548  T
Q  207 agaatgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
    | | |||||||||||||| |||  ||||||||||||| ||||    
T  53300549 aaagtgttacatttataaattttaagaagttgtaaaaagtgt 53300590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 24559072 - 24559014
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac 100  Q
    ||||||||| ||||||||||| ||||||| ||||| ||||||||  |||||||||||||    
T  24559072 taaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaac 24559014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 21539348 - 21539295
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttag 95  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| || |||||||||    
T  21539348 taaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttag 21539295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 48464049 - 48464118
Alignment:
Q  28 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggt 97  Q
    ||||||||| ||| ||||| ||  ||||||||||| ||||||| ||||| |||||||| |||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 5911765 - 5911684
Alignment:
Q  18 atagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||||||||||| | | ||||||||| ||||||||||||||||||| ||||| || ||||| |||||||||||||    
T  5911765 atagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaa 5911684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 51758753 - 51758980
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccct---attactaaaaag 115  Q
    |||||||| ||||||||| | | ||||||||| ||||||||| | ||||||| ||| | || | ||| |||| ||||||||  ||   ||||||||| ||    
T  51758753 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagag 51758852  T
Q  116 attttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||||| ||||||||| | ||||||||| | ||| |||||||||||  |     |||| |||||| |||||||||||||| |    
T  51758853 -ttttagttacattttatagtattatctgtaacaattaaaaagtgttgcaaa-tgttacattattgtaacactttttgtatcaccagtaacaataaaaaa 51758950  T
Q  210 atgttacatttataattttcgagaagttgt 239  Q
     |||||||||||| ||||| ||||||||||    
T  51758951 gtgttacatttatgatttttgagaagttgt 51758980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 18308249 - 18308386
Alignment:
Q  118 tttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaagaat 211  Q
    |||| ||||||||||| ||||| | ||||||||||||||||||||  |||||||||||||||      | |||| |||||| |  ||||| || || |||    
T  18308249 tttagttacattttatagtattgtttgtaacattcaaaaagtgtcacaaaatgttacattattgtaacactttttgtatcaccgataacactagaaaaat 18308348  T
Q  212 gttacatttataattttcgagaagttgtaaaatgtgtt 249  Q
    ||||||||||||||||| |||||||| ||||| |||||    
T  18308349 gttacatttataatttttgagaagttataaaaagtgtt 18308386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 28636903 - 28637065
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    |||||||| || |||||| | | ||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||||   | || || ||||| ||    
T  28636903 tagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtcactgttgctaaagag 28637002  T
Q  116 attttaattacattttattgt-atttctgtaacattcaaaaagtgtcgtaaaatgttacattat 178  Q
    | |||| ||||||||||| || || |||   ||| ||||||||||||| | |||||||||||||    
T  28637003 a-tttagttacattttatagtaatatctacgacaatcaaaaagtgtcgcacaatgttacattat 28637065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 16222778 - 16222858
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    |||||||| ||||||||| | | ||||||||| ||||||||||| || |||| ||||| || |||||||||||||||||||    
T  16222778 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaa 16222858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 37097440 - 37097374
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaa 85  Q
    |||||||||||||||||| | | ||||||||| |||||||||||||| |||| ||||| ||||||||    
T  37097440 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaa 37097374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 897454 - 897535
Alignment:
Q  18 atagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||| ||| ||||||||| ||| ||||| ||| |||||||| || ||||||| ||||| || ||||| |||||||||||||    
T  897454 atagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 3399645 - 3399702
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||| | ||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  3399645 taaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaa 3399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 12189975 - 12190032
Alignment:
Q  42 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||| ||||| ||||| ||||||| ||||| |||||||| |||||||||||||    
T  12189975 taaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaa 12190032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 15214327 - 15214407
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||||||||||   | ||||||||| ||||| ||||| ||||||| |||||  ||||||| ||||||| |||||    
T  15214327 tagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaa 15214407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 1843985 - 1844032
Alignment:
Q  52 aaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||||||||| ||| ||||| |||||||| |||||||||||||    
T  1843985 aaaatgttactgattgaatttagtaacatttgaacaattgttaggtaa 1844032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 13208621 - 13208692
Alignment:
Q  28 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 99  Q
    ||||||||| | ||||||| ||| ||||||||||| ||||||| ||||| || |||||  ||||||||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaa 13208692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 6699 - 6935
Alignment:
Q  19 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaag 115  Q
    ||||||||||| |||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   |  | ||||||||| |    
T  6699 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatg 6798  T
Q  116 attttaattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattat-----aatttttagtatcatcagtaacaataaaaga 209  Q
     ||||| ||||||||||| ||| | ||||||||| ||||||||||| |  ||||| ||| ||||     || |||| ||||||   |||||||||||| |    
T  6799 -ttttagttacattttatagtactatctgtaacaatcaaaaagtgttg-caaatggtaccttattgtaaaactttttgtatcacttgtaacaataaaaaa 6896  T
Q  210 atgttacatttataattttcgagaagttgtaaaatgtgt 248  Q
     |||||||||||||||||| ||| |||||||||| ||||    
T  6897 gtgttacatttataatttttgaggagttgtaaaaagtgt 6935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 40791 - 40562
Alignment:
Q  26 acttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaa 122  Q
    ||||||||||| | | ||||||||| ||| ||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||||     
T  40791 acttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagag-ttttag 40693  T
Q  123 ttacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgttac 216  Q
    ||||||||||| ||||| ||||||||| | |||||||||| | ||||||||||||||  |     |||| ||||||  ||||||||| ||| | | ||||    
T  40692 ttacattttatagtattatctgtaacaattaaaaagtgtc-tcaaatgttacattatcgtaacactttttgtatcactagtaacaatgaaaaagttttac 40594  T
Q  217 atttataattttcgagaagttgtaaaatgtgt 248  Q
    |||||||||||| |||||||||||||| ||||    
T  40593 atttataatttttgagaagttgtaaaaagtgt 40562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 843 - 611
Alignment:
Q  23 aacacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattt 119  Q
    |||||||||||||| | | ||||||||| ||| ||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||    
T  843 aacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagag-ttt 745  T
Q  120 taattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattata-----atttttagtatcatcagtaacaataaaagaatgt 213  Q
    || ||||||||||| ||||| ||| ||||| | ||||||||||| ||| |||||||||||      | |||| ||||||  ||||||||| ||| | |||    
T  744 tagttacattttatagtattatctataacaattaaaaagtgtcgcaaa-tgttacattattggaacactttttgtatcactagtaacaatgaaaaagtgt 646  T
Q  214 tacatttataattttcgagaagttgtaaaatgtgt 248  Q
    ||||||||||||||| ||| |||||||||| ||||    
T  645 tacatttataatttttgagtagttgtaaaaagtgt 611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University