View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10533_low_7 (Length: 236)
Name: NF10533_low_7
Description: NF10533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10533_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22367242 - 22367018
Alignment:
| Q |
1 |
ctaaaacattacttaaatcctttgtacg-acgatccctacaaaatataggcggttgaaggtgcttactttaagctcaaaccaacttgaaattcctcatga |
99 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22367242 |
ctaaaacattacttaaatcctttgtaaggacgatccctacaaaatataggtggttgaaggtgcttactttaagctcaaaccaacatgaaattcctcatga |
22367143 |
T |
|
| Q |
100 |
tttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctagag |
199 |
Q |
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|
|||||||||||||||||||||||||| |||| |||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22367142 |
tttaggaagtttgaaccacttgaaatatttttggttcagggggaatggagaaagaaattctgaacttccaaaatccattggcatgcttgtgaacctagag |
22367043 |
T |
|
| Q |
200 |
actttggatttaagagaaacagagt |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
22367042 |
actttggatttaagagaaacagagt |
22367018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 22435949 - 22435735
Alignment:
| Q |
1 |
ctaaaacattacttaaatcctttgtacga-cgatccctacaaaatataggcggttgaaggtgcttactttaagctcaaaccaacttgaaattcctcatga |
99 |
Q |
| |
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|||| ||||||| ||||||||||||| | |||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
22435949 |
ctaatacattacctaaatcctttgtaagggcgatccctgcaaaatataggcggttgaaggtacttgctttaagctcaaaacaacttgaaattcctcatga |
22435850 |
T |
|
| Q |
100 |
tttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctagag |
199 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22435849 |
tttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccaaaatccattggcatgctcgtgaacctagag |
22435750 |
T |
|
| Q |
200 |
actttggatttaaga |
214 |
Q |
| |
|
||||||||||||||| |
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|
| T |
22435749 |
actttggatttaaga |
22435735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 214
Target Start/End: Complemental strand, 22467264 - 22467052
Alignment:
| Q |
6 |
acattacttaaatcctttgtacg-acgatccctacaaaatataggcggttgaaggtgcttactttaagctcaaaccaact---tgaaattcctcatgatt |
101 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| | || || | |||||||||| |||||| |
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| T |
22467264 |
acatcacttaaatcctttgtaaggacgatccctacaaaatataggcggttgaaggtgcttgctttgatgcataaggaattagctgaaattcctaatgatt |
22467165 |
T |
|
| Q |
102 |
taggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctagagac |
201 |
Q |
| |
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| |||||||||||||||||||||| | || ||||| || ||||||||| || |||||||| |||||||||||||||||||||| | | ||| ||||||| |
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| T |
22467164 |
tgggaagtttgaaccacttgaaatatcttgagttcgggatgattggaggaagatattctggacttccaaaatccattggcatgatcgcaaacttagagac |
22467065 |
T |
|
| Q |
202 |
tttggatttaaga |
214 |
Q |
| |
|
||||||||||||| |
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|
| T |
22467064 |
tttggatttaaga |
22467052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 214
Target Start/End: Complemental strand, 22629759 - 22629547
Alignment:
| Q |
6 |
acattacttaaatcctttgtac-gacgatccctacaaaatataggcggttgaaggtgcttactttaa-gctcaa--accaacttgaaattcctcatgatt |
101 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| | || | | || |||||||||| |||||| |
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|
| T |
22629759 |
acatcacttaaatcctttgtaaagacaatccctacaaaatataggcggttgaaggtgcttgctttgatgcatgagtatttacctgaaattcctaatgatt |
22629660 |
T |
|
| Q |
102 |
taggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggcatgcttgtgaacctagagac |
201 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| | ||||||||| || | ||| || | |||||||||||||||||||||| |||||||||||||| |
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| T |
22629659 |
agggaagtttgaaccacttgaaatattttgagttcctgatgattggaggaagagattttggaattccaaaatccattggcatgctcgtgaacctagagac |
22629560 |
T |
|
| Q |
202 |
tttggatttaaga |
214 |
Q |
| |
|
||||||||||||| |
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|
| T |
22629559 |
tttggatttaaga |
22629547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 22353132 - 22352914
Alignment:
| Q |
2 |
taaaacattacttaaatcctttgtacg-acgatccctacaaaatataggcggttgaaggtgcttactttaa-gctcaaacca--acttgaaattcctcat |
97 |
Q |
| |
|
|||||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |||| | || || | | | ||||||||| || |
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|
| T |
22353132 |
taaaacatcactaaaatcctttgtaaggacgatccctacaaaatataggcggttgaaggtgcttgctttgatgcataaggaattaatagaaattcctaat |
22353033 |
T |
|
| Q |
98 |
gatttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattc---tgaacttccaaaatccattggcatgcttgtgaacc |
194 |
Q |
| |
|
||||| |||| ||||||||| ||||||| || ||||| || ||||||||| || |||||| || |||||||||||||||||||||||| ||||||| |
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|
| T |
22353032 |
gatttgggaaatttgaaccatttgaaatattg--agttctggatgattggaggaagatattcaactggacttccaaaatccattggcatgctcgtgaacc |
22352935 |
T |
|
| Q |
195 |
tagagactttggatttaagag |
215 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
22352934 |
tagagactttggatttaagag |
22352914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 22430402 - 22430271
Alignment:
| Q |
83 |
cttgaaattcctcatgatttaggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctgaacttccaaaatccattggca |
182 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||||| |||| |||| ||||| |||| | ||||||| ||||||||||||||||||||| |
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|
| T |
22430402 |
cttgaaattcctaatgatttgggaagtttaaaccacttgaaatattttgggttctaggtgaatggaagtagatattctaaacttccaaaatccattggca |
22430303 |
T |
|
| Q |
183 |
tgcttgtgaacctagagactttggatttaaga |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
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|
| T |
22430302 |
tgctagtgaacctagagactttggatttaaga |
22430271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 22357310 - 22357094
Alignment:
| Q |
11 |
acttaaatcctttgtac-gacgatccctacaaaatataggcggttgaaggtgcttactttaagctcaaacc---aac---ttgaaattcctcatgattta |
103 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||| ||||| ||||| | ||||| |
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|
| T |
22357310 |
acttgaatcctttgtaaagacgatccctacaaaatataggcggttgaaggtgcttgctttgagc---aaccgtgaacggcttgaagttcctaaggatttg |
22357214 |
T |
|
| Q |
104 |
ggaagtttgaaccacttgaaattttttcagttcagggtgattggagaaacatattctg---------aacttccaaaatccattggcatgcttgtgaacc |
194 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||||||||||| || || |||||||||||||||||||||| ||||||| |
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|
| T |
22357213 |
ggaagtttgaaccacttgaaatattttgggttctttgtgattggagaaacatatcctatatttccaaaaattccaaaatccattggcatgctcgtgaacc |
22357114 |
T |
|
| Q |
195 |
tagagactttggatttaaga |
214 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22357113 |
tagagactttggatttaaga |
22357094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 22441903 - 22441847
Alignment:
| Q |
160 |
tgaacttccaaaatccattggcatgcttgtgaacctagagactttggatttaagaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22441903 |
tgaacttccaaaatccattggcatgctcgtgaacctagagactttggatttaagaga |
22441847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 37930020 - 37929965
Alignment:
| Q |
157 |
ttctgaacttccaaaatccattggcatgcttgtgaacctagagactttggatttaa |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37930020 |
ttctggacttccaaaatccattggcatgctcgtgaacctagagactttggatttaa |
37929965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 22634661 - 22634612
Alignment:
| Q |
163 |
acttccaaaatccattggcatgcttgtgaacctagagactttggatttaa |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22634661 |
acttccaaaatccattggcatgctcgtgaacctagagactttggatttaa |
22634612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 22614416 - 22614365
Alignment:
| Q |
164 |
cttccaaaatccattggcatgcttgtgaacctagagactttggatttaagag |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
22614416 |
cttccaaaatccattggcatgctccaaaacctagagactttggatgtaagag |
22614365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 22441976 - 22441927
Alignment:
| Q |
81 |
aacttgaaattcctcatgatttaggaagtttgaaccacttgaaatttttt |
130 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||| |||| |
|
|
| T |
22441976 |
aacttgaaattcctattgatttgggaagtttgaagcacttgaaatatttt |
22441927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 22430487 - 22430419
Alignment:
| Q |
2 |
taaaacattacttaaatcctttgt-acgacgatccctacaaaatataggcggttgaaggtgcttacttt |
69 |
Q |
| |
|
|||||||| |||| |||||||||| | || ||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
22430487 |
taaaacatcacttgaatcctttgtgaggagaatcccaacaacatataggcggttgaaggtgcttgcttt |
22430419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 27373765 - 27373811
Alignment:
| Q |
162 |
aacttccaaaatccattggcatgcttgtgaacctagagactttggat |
208 |
Q |
| |
|
||||||| |||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
27373765 |
aacttccgaaatacattggaatgcttgagaacctagagactttggat |
27373811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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