View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10533_low_8 (Length: 227)

Name: NF10533_low_8
Description: NF10533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10533_low_8
NF10533_low_8
[»] chr3 (17 HSPs)
chr3 (1-227)||(22367307-22367533)
chr3 (2-222)||(22467339-22467559)
chr3 (7-224)||(22357388-22357605)
chr3 (2-224)||(22442128-22442350)
chr3 (2-224)||(22430556-22430778)
chr3 (3-224)||(22629829-22630048)
chr3 (2-224)||(22353201-22353420)
chr3 (2-220)||(22436021-22436239)
chr3 (2-226)||(22634893-22635114)
chr3 (2-224)||(37930248-37930468)
chr3 (3-224)||(22457875-22458096)
chr3 (3-224)||(22480856-22481077)
chr3 (6-65)||(22620429-22620488)
chr3 (6-65)||(30988838-30988897)
chr3 (6-65)||(22647717-22647776)
chr3 (1-52)||(21931290-21931341)
chr3 (6-65)||(21946498-21946557)
[»] chr1 (4 HSPs)
chr1 (6-65)||(2305019-2305078)
chr1 (6-65)||(34976245-34976304)
chr1 (6-65)||(34983356-34983415)
chr1 (6-65)||(34990091-34990150)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22367533 - 22367307
Alignment:
1 tgacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
22367533 tgacattggaagaggttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagtagatgggatcactattgatggaagagtagacagttg 22367434  T
101 ccgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactgga 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
22367433 ccgtgttcatgatctagtgcatgcaatgatccttaataaacatgaggatttaagcttttgcaagagtattaccgaggacagacaattgccttcaactgga 22367334  T
201 atgattcgacgcctatcaatagcatca 227  Q
    |||||||||||||||||||||||||||    
22367333 atgattcgacgcctatcaatagcatca 22367307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 22467559 - 22467339
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |   || | |||||||||||||||| | |||||     
22467559 gacattggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtattgatggaagagtaaaaagttgt 22467460  T
102 cgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaa 201  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||| |||||||||| ||| ||||||||    
22467459 cgtgttcatgatctagtgcatgcaatgatccttgataaatatgaggatttaagtttttgcaagaatattactgaggacaaacaattgtctttaactggaa 22467360  T
202 tgattcgacgcctatcaatag 222  Q
    |||||||||||||||||||||    
22467359 tgattcgacgcctatcaatag 22467339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 22357605 - 22357388
Alignment:
7 tggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgccgtgt 106  Q
    |||||||||||||||||||| |||||| |||||| || ||||||||||||||||||||||||   |||| |||||||||||||||| |  |||| |||||    
22357605 tggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaatcagtattgatggaagagtaaaacgttgtcgtgt 22357506  T
107 tcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaatgatt 206  Q
    ||||||||||||||||| |||||||||||| |||||| || |||||||||||||| ||| |||||| ||||||||||||||| ||| |||||||||||||    
22357505 tcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaatattactgagggcaaacaattgtctttaactggaatgatt 22357406  T
207 cgacgcctatcaatagca 224  Q
    ||||||||||||||||||    
22357405 cgacgcctatcaatagca 22357388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 22442350 - 22442128
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    |||||||||| |||||||||||||| |||||| || ||| |||  |||||||||||||||||||| |   | || |||||||||||||||| | ||||||    
22442350 gacattggaaaaggttgcagaaggatatttaaaagtgttaatctgtagaagtttggtgcaagtagtttcaaccagtattgatggaagagtaaaaagttgc 22442251  T
102 cgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaa 201  Q
    |||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||| ||| |||||| ||||| ||||||||| ||| ||||||||    
22442250 cgtgttcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaatattactgagggaaaacaattgtctttaactggaa 22442151  T
202 tgattcgacgcctatcaatagca 224  Q
    |||||||||||||||||||||||    
22442150 tgattcgacgcctatcaatagca 22442128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 22430778 - 22430556
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   || | ||||||||||||||||   |||||     
22430778 gacattgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagattcaataagtattgatggaagagtaagaagttgt 22430679  T
102 cgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaa 201  Q
    |||||||||||||||||||||| |||||||||| | ||| ||||||||||||||||||| |||  ||| ||||||  ||| ||||||  || ||||||||    
22430678 cgtgttcatgatctagtgcatgaaatgatccttaaaaaatatgaggatttaagcttttgtaagtatatcaccgagaacaatcaattgtatttaactggaa 22430579  T
202 tgattcgacgcctatcaatagca 224  Q
    |||||| ||||||||||||||||    
22430578 tgattcaacgcctatcaatagca 22430556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 22630048 - 22629829
Alignment:
3 acattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgcc 102  Q
    |||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| |   |  | |||  ||||||||||| | ||||| |    
22630048 acattggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagtagtttcaacaagtat--atggaagagtaaaaagttgtc 22629951  T
103 gtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaat 202  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||  |||| ||| |||||| ||| |||||||||    
22629950 gtgtacatgatctagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattattgaggacaagcaattgtctttaactggaat 22629851  T
203 gattcgacgcctatcaatagca 224  Q
    |||| |||||||||||||||||    
22629850 gatttgacgcctatcaatagca 22629829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 22353420 - 22353201
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    |||| |||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||    ||| |||||||||||||||| | |||||     
22353420 gacaatggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaaaagttgt 22353321  T
102 cgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaa 201  Q
    |||||||| ||||||||||||| ||||||||||   ||| ||||||||||||| |||||||||| ||||||   | |||||||| || | | ||||||||    
22353320 cgtgttcacgatctagtgcatgaaatgatccttagaaaatatgaggatttaagtttttgcaagaatattac---gagcaaacaactgtcattaactggaa 22353224  T
202 tgattcgacgcctatcaatagca 224  Q
    ||||| |||||||||||||||||    
22353223 tgatttgacgcctatcaatagca 22353201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 22436239 - 22436021
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    ||||||||||||  ||||| ||||| |||||||||||||| || |||||||||||||||| |||| |   || | |||||||||||||||| | |||||     
22436239 gacattggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaataagtattgatggaagagtaaaaagttgt 22436140  T
102 cgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaa 201  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| |||| ||| |||||  ||| |||| ||     
22436139 cgtgttcatgatttagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattactgaggacaatcaattttctttaactagag 22436040  T
202 tgattcgacgcctatcaat 220  Q
    ||| |||||||||||||||    
22436039 tgactcgacgcctatcaat 22436021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 22635114 - 22634893
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |   |  | |||||||||||||||| | ||||||    
22635114 gacatttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatggaagagtaaaaagttgc 22635015  T
102 cgtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaa 201  Q
    || ||||||||||||||||||| |||||||||||| |||  | |||||||||| |||||||||| ||||    |||||||| |||||   ||  ||||||    
22635014 cgcgttcatgatctagtgcatgaaatgatccttgacaaatttaaggatttaagtttttgcaagaatatttttaagggcaaa-aattg--gtctgctggaa 22634918  T
202 tgattcgacgcctatcaatagcatc 226  Q
    |||||||||| ||||||||||||||    
22634917 tgattcgacgtctatcaatagcatc 22634893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 37930468 - 37930248
Alignment:
2 gacattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgc 101  Q
    |||||||||| ||||||| |||||| |||||| |||||| |||  |||||||||||||||||||| |   | |  |||||||||||||||| | |||||     
37930468 gacattggaaaaggttgcggaaggatatttaaaagagttaatctgtagaagtttggtgcaagtagtttcaaccggtattgatggaagagtaaaaagttgt 37930369  T
102 cgtgttcatgatctagtgcatgcaatgatcctt-gataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactgga 200  Q
    |||||||||||||||||||||| |||||||||| || |||  |  ||||||||| |||||| ||| ||||||  |||||||| ||||| ||   || |||    
37930368 cgtgttcatgatctagtgcatgaaatgatcctttgacaaatttatggatttaagtttttgcgagaatattacttagggcaaaaaattgtct---accgga 37930272  T
201 atgattcgacgcctatcaatagca 224  Q
    || ||| |||||||||||||||||    
37930271 ataatttgacgcctatcaatagca 37930248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 22458096 - 22457875
Alignment:
3 acattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgcc 102  Q
    ||||||||||| |||||||| ||| |||||| ||| ||||||  |||| ||||||||||||||| |   || | |||||||||||||| | | |||||      
22458096 acattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgtt 22457997  T
103 gtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaat 202  Q
    ||||||||||||| ||||||||| |||||||||| |||  ||| || ||||| |||||||||| ||||| |||||   | ||||   ||| || ||| ||    
22457996 gtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggat 22457897  T
203 gattcgacgcctatcaatagca 224  Q
    | ||||||||||||||||||||    
22457896 ggttcgacgcctatcaatagca 22457875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 22481077 - 22480856
Alignment:
3 acattggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagtagatgggatcactattgatggaagagtagacagttgcc 102  Q
    ||||||||||| |||||||| ||| |||||| ||| ||||||  |||| ||||||||||||||| |   || | |||||||||||||| | | |||||      
22481077 acattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgtt 22480978  T
103 gtgttcatgatctagtgcatgcaatgatccttgataaacatgaggatttaagcttttgcaagagtattaccgagggcaaacaattgccttcaactggaat 202  Q
    ||||||||||||| ||||||||| |||||||||| |||  ||| || ||||| |||||||||| ||||| |||||   | ||||   ||| || ||| ||    
22480977 gtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggat 22480878  T
203 gattcgacgcctatcaatagca 224  Q
    | ||||||||||||||||||||    
22480877 ggttcgacgcctatcaatagca 22480856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 22620488 - 22620429
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||||    
22620488 ttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagta 22620429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 30988897 - 30988838
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||    
30988897 ttggaagacgttgcagaaggatatttaacagagttgatccatagaagcttggtgcaagta 30988838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 22647776 - 22647717
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| ||||||||| || ||||||  ||||||||||||||||||||||| ||||||    
22647776 ttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagta 22647717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21931290 - 21931341
Alignment:
1 tgacattggaagaggttgcagaaggacatttaatagagttgatccatagaag 52  Q
    |||| |||||||| || ||||||||| |||||| ||||||||||||||||||    
21931290 tgactttggaagaagtggcagaaggatatttaacagagttgatccatagaag 21931341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 21946498 - 21946557
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| || ||||||||| |||||| ||||||||||||||||||  |||| ||||||    
21946498 ttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctggttcaagta 21946557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 2305078 - 2305019
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| |||||||||||| |||||  ||||||||| | | |||||||||||||||||    
2305078 ttggaagaagttgcagaaggatatttatcagagttgattcgtcgaagtttggtgcaagta 2305019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 34976245 - 34976304
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| |||||| ||||| |||||| ||||||||| | | |||||||||||||||||    
34976245 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagta 34976304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 34983356 - 34983415
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| |||||| ||||| |||||| ||||||||| | | |||||||||||||||||    
34983356 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagta 34983415  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 34990091 - 34990150
Alignment:
6 ttggaagaggttgcagaaggacatttaatagagttgatccatagaagtttggtgcaagta 65  Q
    |||||||| |||| |||| || |||||| ||||||||| | |||||||||||||||||||    
34990091 ttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgcaagta 34990150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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