View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_1 (Length: 513)
Name: NF10534_1
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Original strand, 4191468 - 4191972
Alignment:
| Q |
9 |
agcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaactacttcac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191468 |
agcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaactacttcac |
4191567 |
T |
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| Q |
109 |
aaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatttgggaaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191568 |
aaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatttgggaaaaa |
4191667 |
T |
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| Q |
209 |
gacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatttatgttggggacactcaagaggt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191668 |
gacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatttatgttggggacactcaagaggt |
4191767 |
T |
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| Q |
309 |
atgtttctactcaatgtttctctatgnnnnnnnaatatttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatct |
408 |
Q |
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| T |
4191768 |
atgtttctactcaatgtttctctatgtttttttaatatttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatct |
4191867 |
T |
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| Q |
409 |
gatattgcattagcttctgagattataactcgtcattggccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggatt |
508 |
Q |
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| T |
4191868 |
gatattgcattagcttctgagattataactcgtccttggccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggatt |
4191967 |
T |
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| Q |
509 |
gttct |
513 |
Q |
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| T |
4191968 |
gttct |
4191972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Original strand, 52211027 - 52211531
Alignment:
| Q |
9 |
agcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaactacttcac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52211027 |
agcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaagttctcttgaactacttcac |
52211126 |
T |
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| Q |
109 |
aaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatttgggaaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211127 |
aaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatttgggaaaaa |
52211226 |
T |
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| Q |
209 |
gacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatttatgttggggacactcaagaggt |
308 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52211227 |
gacggttattaaggaagtgtgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatttatgttggggacattcaagaggt |
52211326 |
T |
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| Q |
309 |
atgtttctactcaatgtttctctatgnnnnnnnaatatttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatct |
408 |
Q |
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| T |
52211327 |
atgtttctactcaatgtttgtctatgtttttttaatatttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatct |
52211426 |
T |
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| Q |
409 |
gatattgcattagcttctgagattataactcgtcattggccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggatt |
508 |
Q |
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| T |
52211427 |
gatattgcattagcttctgatattataactcgtctttggccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggatt |
52211526 |
T |
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| Q |
509 |
gttct |
513 |
Q |
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| T |
52211527 |
gttct |
52211531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 47857802 - 47858110
Alignment:
| Q |
9 |
agcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaactacttcac |
108 |
Q |
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||||||||| ||||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
47857802 |
agcaaaggggctgcagtttacacccaaaaggagtttaactgttggatttattcatatatataggtttctagatgatggaaggtctcttgaacttcttcac |
47857901 |
T |
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| Q |
109 |
aaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatttgggaaaaa |
208 |
Q |
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| T |
47857902 |
aaaactcaggttgagggtgttcctcttgctctatgtcagtttcaaggaagattacttgcaggaataggacctgtgctcaggctatatgatttgggaaaaa |
47858001 |
T |
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| Q |
209 |
gacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatttatgttggggacactcaagaggt |
308 |
Q |
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|||| |||||||| || | |||||||||| ||| |||| | |||||||||||||| |||||||||||||||||||||| || |||| |||||||| |
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| T |
47858002 |
gacgattattaagaaaatgtgagaataagtcatttcccatttcgattgtctctattcatgcctaccgtgatcgaatttatgtaggtgacatccaagaggt |
47858101 |
T |
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| Q |
309 |
atgtttcta |
317 |
Q |
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| T |
47858102 |
atgtttcta |
47858110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 47716277 - 47715973
Alignment:
| Q |
13 |
aagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaactacttcacaaaa |
112 |
Q |
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||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
47716277 |
aagggactgcagtttacacccaaaaggagtttaactgctggattcattcatatatataggtttctagatgatggaaggtctcttgaacttctccacaaaa |
47716178 |
T |
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| Q |
113 |
ctcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatttgggaaaaagacg |
212 |
Q |
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| T |
47716177 |
ctcaggttgagggtgttcctctcgctctatgtcagtttcaaggaagattacttgcaggaattggacctgtactcaggctatatgatttgggaaaaagacg |
47716078 |
T |
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| Q |
213 |
gttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatttatgttggggacactcaagaggtatgt |
312 |
Q |
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| T |
47716077 |
attattaagaaaatgtgagaataagtcattccccagctccattgtctctattcatgcctaccgtgatcgaatttatgtaggtggcatccaagaggtatgt |
47715978 |
T |
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| Q |
313 |
ttcta |
317 |
Q |
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||||| |
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| T |
47715977 |
ttcta |
47715973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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