View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_10 (Length: 365)
Name: NF10534_10
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_10 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 41482664 - 41482836
Alignment:
| Q |
28 |
gatccaaaagagagctattacattggctctttggaagataccactagtgttcgtttgaatcaatggccttctgatggtatgaatttcctttgtgctcatt |
127 |
Q |
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| T |
41482664 |
gatccaaaagagagctattacattggctctttggaagataccactagtgttcgtttgaatcaatggccttctgatagtatgaatttcctttgtgctcatt |
41482763 |
T |
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| Q |
128 |
cttaattaggaataatgaaaattagttttgtatacatggtttgtttttacataagcttaattacttgaggtgg |
200 |
Q |
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| T |
41482764 |
cttaattaggaataatgaaaattagtttcgtatacatggtttgtttttacataagcttaattacttgaggtgg |
41482836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 228 - 357
Target Start/End: Original strand, 41482849 - 41482978
Alignment:
| Q |
228 |
attgcattgatgctccagaattactaccaaattggaaacccacaatggaatccttattttggaaaacactgtaagttttattacccttcaaatgtatttt |
327 |
Q |
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| T |
41482849 |
attgcattgatactccagaattactaccaaattggaaacccacaatggaatccttattttggaaaacactgtaagttttattacccttcaaatgtatttt |
41482948 |
T |
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| Q |
328 |
tctctaaattattaaatttgaatattcttc |
357 |
Q |
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| T |
41482949 |
tctctaaattattaaatttcaatattcttc |
41482978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 41490324 - 41490502
Alignment:
| Q |
28 |
gatccaaaagagagctattacattggctctttggaagataccactagtgttcgtttgaatcaatggccttctgatggtatgaatttcct-----ttgtgc |
122 |
Q |
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| T |
41490324 |
gatccaaaagagagctattacattggccctttaacagataccacaagtgttcgtctgaatcaatggccttctaatggtatgaatttcctttgggttgtgc |
41490423 |
T |
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| Q |
123 |
tcattcttaattaggaataatgaaaattagttttgtatacatggtt---tgtttttacataagcttaattacttgaggtg |
199 |
Q |
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| T |
41490424 |
acattcttcattaggaataatgaaaattaattttgtgttc-tggttttatttttttacatgagattaattacttgaggtg |
41490502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 41490532 - 41490597
Alignment:
| Q |
243 |
cagaattactaccaaattggaaacccacaatggaatccttattttggaaaacactgtaagttttat |
308 |
Q |
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| T |
41490532 |
cagaattactcccaaattggagacccacaatggaatccttattttggaaaatactgtaagttttat |
41490597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 41496845 - 41496922
Alignment:
| Q |
244 |
agaattactaccaaattggaaacccacaatggaatcctt-attttggaaaacactgtaagttttattacccttcaaat |
320 |
Q |
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| T |
41496845 |
agaattactgccaaattggatacccacaatggaatcttttattttggaaaatactgtaaggtttattacccttcaaat |
41496922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 41496762 - 41496819
Alignment:
| Q |
70 |
actagtgttcgtttgaatcaatggccttctgatggtatgaatttcctttgtgctcatt |
127 |
Q |
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| T |
41496762 |
actagtgttcgtctgaatcaatggccttgtgatggtatacattttctttgtcctcatt |
41496819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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