View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_14 (Length: 330)
Name: NF10534_14
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_14 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 7598996 - 7599317
Alignment:
| Q |
9 |
agcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgataaatttacacacttgattgcttggt |
108 |
Q |
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| T |
7598996 |
agcatggggcacgtggaatcccgtgtgaatcagcgatgaccactttgcaaggctaaatactcattgatgaccgataaatttacacacttgattgcttggt |
7599095 |
T |
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| Q |
109 |
cggtgtaataactcctacatgtataatcacgtaaacatattcttattgattcatcacgtaagaaaaattattgacatcaagttaatgcgaatatcaagag |
208 |
Q |
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| T |
7599096 |
cggtgtaataactcctacatgtataatcacgtaaacatattcttattgattcatcacgtaagaaaaattattgacatcaagttaatgcaaatatcaagag |
7599195 |
T |
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| Q |
209 |
gtaatctaacctcttagtttgaaattaagagggtgatcaacaacttttcaagcattaattttgtccaaagctacaagttcagtttgcatggcatgattca |
308 |
Q |
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| T |
7599196 |
gtaatctaacatcttagtttgaaattaagagggtgatcaacaacttttcaagcattaattttgtccaaagctacaagttcagtttgcatggcatgattca |
7599295 |
T |
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| Q |
309 |
agcactgaaatttactagcttc |
330 |
Q |
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| T |
7599296 |
agcactgaaatttactagcttc |
7599317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 184549 - 184474
Alignment:
| Q |
9 |
agcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgata |
84 |
Q |
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| T |
184549 |
agcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgata |
184474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 492967 - 493042
Alignment:
| Q |
9 |
agcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgata |
84 |
Q |
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| T |
492967 |
agcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgata |
493042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 18190628 - 18190689
Alignment:
| Q |
9 |
agcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactc |
70 |
Q |
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| T |
18190628 |
agcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactc |
18190689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 34656235 - 34656310
Alignment:
| Q |
9 |
agcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgata |
84 |
Q |
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| T |
34656235 |
agcatggggcacgtggaatgccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgata |
34656310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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